Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01865 ATGAACGACTTGTTATCAGGTTTGTTCTCAAAGGGAAAACAAGAAGAGCATGTGATTGAGATAACAGAAGGTGGTGGCATAATGGAGTTGGAGAAGTTCTTGGAAGAAGTGGAATCAGTGAAGGAGGACTTGAAGGAGCTAGAGCGTCTCCACCTAAGCCTTGATGCTACAAACCAAAACGGAAAAGCGCTTCACAGCCCAAAGGGCGTTAGGGAGCTACGGTCTCGCATGGACCTGGACGTGGCTCTCTCTCTCACCAAAGCCAAGCACGTCAAGGGTCGCTTGGCGGCTCTCCACCGTGCCAACCAAGCCACCCTCTCCTTGCCCGATTGCGGGCCCGGTTCATACTCCGACCGGACCCGAACCGCGCTGGTGGGGGCCTTGACCAAGAACCTTAGACAGTCCATGGCGAGTTTCAATAAGCTGAGGGAGCAGATATCGTACGAGTACAGAGACACCGTGCAACGTAGATACTACGCTGTCACTGGAGAGAACCCTGATCAAGAAACCATCGACCTCCTCATCTCTACGGGTGAGAGCGAAACATTCTTACAGAAAGCCATCCAACAGCAAGGGAGAGCCAGTGTCATGGACACAATCCAAGAGATTCGAGAGAGGCACGGCACGATGAAAGAGATAGAGAGAAGCCTACACGAGCTGCACCAAGTGTTCATGGACATGGCAGTGTTGATCCAACACCAGGGTGAACACTTGGATGACATAGAGAGCCACGTGGAACTCGCAAACTCCTTCGTGAGCAAAGGGGTACAGCATTTGCAGGTCGTGAGGAATCATCAGAAGAACACCCGTAACTTCACTTGTTTCGCCGTTCTGCTCTTCATCATCGTGTTGGTCATAATTCTCCCTATTGTTTTCAGAAATTGA 885 0.5096 MNDLLSGLFSKGKQEEHVIEITEGGGIMELEKFLEEVESVKEDLKELERLHLSLDATNQNGKALHSPKGVRELRSRMDLDVALSLTKAKHVKGRLAALHRANQATLSLPDCGPGSYSDRTRTALVGALTKNLRQSMASFNKLREQISYEYRDTVQRRYYAVTGENPDQETIDLLISTGESETFLQKAIQQQGRASVMDTIQEIRERHGTMKEIERSLHELHQVFMDMAVLIQHQGEHLDDIESHVELANSFVSKGVQHLQVVRNHQKNTRNFTCFAVLLFIIVLVIILPIVFRN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01865 294 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 200 262 IPR000727 -
Gma03g01865 294 CDD SynN 30 187 IPR006011 GO:0016020
Gma03g01865 294 Gene3D - 30 157 - -
Gma03g01865 294 PANTHER SYNTAXIN-121 12 289 - -
Gma03g01865 294 SMART SynN_4 25 151 IPR006011 GO:0016020
Gma03g01865 294 Pfam SNARE domain 238 288 IPR000727 -
Gma03g01865 294 ProSitePatterns Syntaxin / epimorphin family signature. 206 245 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gma03g01865 294 Coils Coil 27 57 - -
Gma03g01865 294 SUPERFAMILY t-snare proteins 30 255 IPR010989 GO:0016020|GO:0016192
Gma03g01865 294 SMART tSNARE_6 195 262 IPR000727 -
Gma03g01865 294 PANTHER SYNTAXIN 12 289 IPR045242 -
Gma03g01865 294 Pfam Syntaxin 32 235 IPR006011 GO:0016020
Gma03g01865 294 CDD SNARE_syntaxin1-like 199 260 - -
Gma03g01865 294 Gene3D - 189 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01865 Gma-Chr3 44634476 44636464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01865 25 274 SNARE and Associated Proteins AT3G11820 62.000 1.04e-109 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01865 K08486 - gmx:100810727 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01865 03 44634476 44636464 Gma03g01865 03 44634476 44636464 ECH
Gma19g01908 19 48277700 48279270 Gma03g01865 03 44634476 44636464 GST
Gma03g01865 03 44634476 44636464 Gma02g01843 02 42585103 42587850 PCT
Gma02g01843 02 42585103 42587850 Gma03g01865 03 44634476 44636464 PCT