Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01863 ATGGACATTAACGAGATCGATGTTCCTTCATTCTTTCTCTGCCCCATTTCGTTAGAAATCATGAAGGATCCAGTGACGGTCTCAACAGGCATCACCTACGACCGTGAAAGCATCGAAACATGGCTGTTCTCGAAGAAAAACACGACATGCCCCATGACCAAACAGCCCTTGATAGATTACACCGATCTCACACCAAACCACACCCTTCGGAGACTCATCCAAGCGTGGTGTACCATGAACACTTCTCACGGCATCGAAAGGATCCCAACCCCCAAACCCCCCATTAACAAAAATCAAATTTCCAAGCTTCTCAAGGACGCTTCTCATTCCCCTCTCACATGCCTCAGGAGACTCAAATCCATCGCTTCAGGAAGCGAAACAAATAAGCGGTGCATGGAAGCTTCTGGTGTTGTTGAATTTCTAGCATCAATTGTAATCAACAACAACAACATCGTTTCTTCAAATGAGGCTGACTCAAATGAGGGATCTGGATTCGAGTTGAGAACAAGTGCAAGCGATGAAGCGTTGAGTTTGCTTCATAATCTTCATTTATCTGATCAAGGGTTGAAGACTCTCTTGAGCTTCAAAACCGGCGACTTTATTGAGTCTTTAACAAGAGTTATGCAAAAGGGGTTCTTTGAATCACGCGCTTATGCAGTGTTCTTGTTGAAATCCATGTCCGAAGTGGCTGAGCCAGTGCAATTATTGCATCTAAGACAAGACCTTTTTGTCGAACTAGTACAAGTCTTGAAGGATCAAATTTCTCAAAAGACATCAAAAGCAACACTTCAAACCCTGATCCAATTCTCTCCTTGGGGGAGGAACAGGATCAAAGCTGTGGAAGCAGGTACCGTTCCTGTTTTGGTAGAGCTTCTTCTCGATTGCAAGGAGAGAAAGCCTTGCGAGATGATGCTGGTGTTGTTGGAAATTCTATGCCAGTGTGCTGAGGGAAGAGCAGAACTTTTGAATCATGCAGCAGGTCTTGCCATTGTGTCCAAAAAGATTCTAAGGGTTTCGACTTTGGCCAATGATAGAGCTGTTAAGATTCTTCTGTCTGTTTCGAGATTCTCTGCGACTCCACATGTTGTTCAAGAAATGCTTAAACTTGGTGTGGTCGCGAAATTGTGCTTGGTGCTTCAGGTGGATAGTGGAAACAAGGCTAAGGAAAAGGCAAGAGAGATTCTCAAATTGCATGCTCGTGCGTGGAGGAATTCTCCATGCATACCGAACAATTTGCTTAATTCATACCCGAACTATGTGTGA 1263 0.4418 MDINEIDVPSFFLCPISLEIMKDPVTVSTGITYDRESIETWLFSKKNTTCPMTKQPLIDYTDLTPNHTLRRLIQAWCTMNTSHGIERIPTPKPPINKNQISKLLKDASHSPLTCLRRLKSIASGSETNKRCMEASGVVEFLASIVINNNNIVSSNEADSNEGSGFELRTSASDEALSLLHNLHLSDQGLKTLLSFKTGDFIESLTRVMQKGFFESRAYAVFLLKSMSEVAEPVQLLHLRQDLFVELVQVLKDQISQKTSKATLQTLIQFSPWGRNRIKAVEAGTVPVLVELLLDCKERKPCEMMLVLLEILCQCAEGRAELLNHAAGLAIVSKKILRVSTLANDRAVKILLSVSRFSATPHVVQEMLKLGVVAKLCLVLQVDSGNKAKEKAREILKLHARAWRNSPCIPNNLLNSYPNYV 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01863 420 PANTHER WDSAM1 PROTEIN 4 417 IPR045185 GO:0061630
Gma03g01863 420 Gene3D - 97 406 IPR011989 -
Gma03g01863 420 Pfam U-box domain 8 80 IPR003613 GO:0004842|GO:0016567
Gma03g01863 420 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
Gma03g01863 420 SUPERFAMILY ARM repeat 113 392 IPR016024 -
Gma03g01863 420 ProSiteProfiles U-box domain profile. 7 83 IPR003613 GO:0004842|GO:0016567
Gma03g01863 420 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 4 417 - -
Gma03g01863 420 SUPERFAMILY RING/U-box 4 84 - -
Gma03g01863 420 SMART Ubox_2 11 76 IPR003613 GO:0004842|GO:0016567
Gma03g01863 420 CDD RING-Ubox_PUB 12 55 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01863 Gma-Chr3 44594085 44595852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01863 1 417 U-box Gene Family AT3G52450 58.486 7.08e-177 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01863 - - gmx:100809123 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01863 03 44594085 44595852 Gma03g01863 03 44594085 44595852 ECH
Gma19g01904 19 48231923 48233182 Gma03g01863 03 44594085 44595852 GST
Gma03g01863 03 44594085 44595852 Gma02g01857 02 42914685 42916123 PCT
Gma10g00758 10 10017763 10019615 Gma03g01863 03 44594085 44595852 PCT
Gma02g01851 02 42735299 42737024 Gma03g01863 03 44594085 44595852 PCT