Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01860 ATGGCGACATACTTTCATCATGGTAACTCCGAAATCCAATCGGGTGGCGCCGACGGACTCCAAACTCTTGTCCTCATGAACCCCGGCTATATCCACTACTCCGACGCGCCGCCGCCGCAGCAGCAAACCTCACAAACCGCCGGAAACCTCGTGTTTCTCAACCCCGCCGCGGTTGCTGGAGGAAATAATAACTCGTTTAACCCCCACGCGCCGCCATCTCACACCCAACAATTCGTTGGAATCCCTCTCCCAAATTCCCAAGACCTCAACCACCACTCCATGCACGCGCACCACGATGTCTCAGCCCTGCATGGCTTCCTGCCGCGCATGCAGTACAATCCCTGGAACGCGCTCGACCCCGCCTTGGCGGCGCGTGAAAATCCACGCGCGCAGCAGGGGCTGTCTTTGGGGTTGGGGTCGTTCCGGGAGGGTCAGGCGCCGGCCATGTCCGGCGACGACCTGCGCATATCGGGCGGGTCGCCGTCGTCGGCTTCTGGGGTTACCAATAACGGAGCTTCTGGCATTCAGAGCGTGCTTTTGAGCTCAAAGTACTTGAAGGCAGCGCATGAGCTTCTAGAAGAGGTTGTGAATGTTAACAATGGAATTGGCACTGAGTTGGGGAAAAAAAGAGGGGGGCAGAACAAGGTAGTTGGAGAATCTTCCGCAGCAGGTAGTGGAGATGGTTCAGTTGGTGGGGAAGGGAACGGAAAGCGCAGCTCTGAGCTATCAACTGCAGAAAGACAAGAAATTCAAATGAAGAAAGCCAAACTAATTGGCATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACCAGCAGATGGAGATAGTGGGTTCATCATTTGAGCAAGCTGCGGGGATTGGTTCAGCAAGGACTTACACTGCCCTTGCATTGCAAACAATCTCGAAGCAGTTTCGGTGCTTGAAAGATGCAATTGCAGGGCAGGTTCGCACTGCGAATAAGAGCTTAGGAGAAGAAGATTGCTTTGGAGGTAAAATGGAAGGTTCGAGGCTCAAATATGTTGACCATCATCTTCGGCAACAGCGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCCGTTTCTGTTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCACCCTTATCCTAAGGATTCGGACAAGCACATGCTTGCAAAACAAACAGGGTTAACAAGGAGCCAGGTTTCAAATTGGTTTATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACACGGAGGAGATGAAGGATCATGAACAGAATCGGTCTGAGGATAAATCAAGCAAGAGCAATGAAGATTCTGCTTCGAAAATGTCAGCCCCACAAGACAAAGTTTCTAGGCCATCAACATCACCACTTGGTGTGAATGTGAGAAGCCAATCAGGATTCAGCTTCATGGGGTCATCAGAGCTAGATGGGATCACACAAGGAAGTCCCAAGAAACCAAGGAACCATGAGATGATGCATTCCCCAAATAGTGTCCCTTCAATGAGCATGGATGTGAAGCCCAATGATGAAAACAATGAGCAGCTCTCAATGAAATTTGGGGTTGAAAGGCAAGGCAGAAATGAGTCCTCTTTCATGGGAAATCAAACAAACTTTAATGGTGGGTTTGGACAGTATCCAATTGGGGATATTGGAAGGTTTGACACAGAGCAGTTTACACCAAGGCTTTCAGGTAATGGTGTTTCCCTCACTCTTGGTCTTGACTCATTACCAGGAACTCATCAAACATTTCTCCCAAACCAAAACATTCAACTGGGAAGAAGCTTGGACATTGGTGAACCAAACGAGTTTGGTGCCATAAGCACTTCCTCTCCTCACTCAACAGCTGCTTATGAGAGTATCAGCATGCAAAACCCAAAGAGGTTTGCTGCACAATTGTTGCCAGACTTTGTGACCTAA 1959 0.4972 MATYFHHGNSEIQSGGADGLQTLVLMNPGYIHYSDAPPPQQQTSQTAGNLVFLNPAAVAGGNNNSFNPHAPPSHTQQFVGIPLPNSQDLNHHSMHAHHDVSALHGFLPRMQYNPWNALDPALAARENPRAQQGLSLGLGSFREGQAPAMSGDDLRISGGSPSSASGVTNNGASGIQSVLLSSKYLKAAHELLEEVVNVNNGIGTELGKKRGGQNKVVGESSAAGSGDGSVGGEGNGKRSSELSTAERQEIQMKKAKLIGMLDEVEQRYRQYHQQMEIVGSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQVRTANKSLGEEDCFGGKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYTEEMKDHEQNRSEDKSSKSNEDSASKMSAPQDKVSRPSTSPLGVNVRSQSGFSFMGSSELDGITQGSPKKPRNHEMMHSPNSVPSMSMDVKPNDENNEQLSMKFGVERQGRNESSFMGNQTNFNGGFGQYPIGDIGRFDTEQFTPRLSGNGVSLTLGLDSLPGTHQTFLPNQNIQLGRSLDIGEPNEFGAISTSSPHSTAAYESISMQNPKRFAAQLLPDFVT 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01860 652 ProSiteProfiles 'Homeobox' domain profile. 360 423 IPR001356 GO:0003677
Gma03g01860 652 Pfam Homeobox KN domain 380 419 IPR008422 GO:0003677|GO:0006355
Gma03g01860 652 SUPERFAMILY Homeodomain-like 364 430 IPR009057 -
Gma03g01860 652 Pfam Associated with HOX 178 314 IPR006563 -
Gma03g01860 652 Gene3D - 366 446 - -
Gma03g01860 652 MobiDBLite consensus disorder prediction 451 493 - -
Gma03g01860 652 MobiDBLite consensus disorder prediction 432 450 - -
Gma03g01860 652 MobiDBLite consensus disorder prediction 432 516 - -
Gma03g01860 652 PANTHER HOMEOTIC PROTEIN, PUTATIVE-RELATED 9 593 - -
Gma03g01860 652 SMART prehox3 173 315 IPR006563 -
Gma03g01860 652 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 9 593 - -
Gma03g01860 652 MobiDBLite consensus disorder prediction 203 246 - -
Gma03g01860 652 CDD homeodomain 363 424 IPR001356 GO:0003677
Gma03g01860 652 Coils Coil 247 274 - -
Gma03g01860 652 MobiDBLite consensus disorder prediction 141 169 - -
Gma03g01860 652 SMART HOX_1 363 427 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01860 Gma-Chr3 44572236 44574980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01860 1 651 Homeobox Transcription Factor Family AT2G35940 50.914 1.76e-175 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gma03g01860 POX 5.8e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01860 - - gmx:100797418 1250.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01860 03 44572236 44574980 Gma03g01860 03 44572236 44574980 ECH
Gma03g01860 03 44572236 44574980 Gma10g00754 10 9877298 9881619 PCT
Gma03g01860 03 44572236 44574980 Gma02g00058 02 709311 711484 PCT
Gma10g00754 10 9877298 9881619 Gma03g01860 03 44572236 44574980 PCT
Gma02g00058 02 709311 711484 Gma03g01860 03 44572236 44574980 PCT