Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01857 ATGCTGCACCCTTCCCTAACACTCCTCCTCCTCCTCCTCCTCTTTCACCCCAACGCCGGGGACCCTAACGACGCCAAAATCCTCCGGCAACTCCGCAACGGGCTGGACAACCCAGAACAACTGCCATGGCCGGACGAGGGCGACGACCCATGTGGTTGGAAATACATTTTCTGCGACAGCAACAAACGCGTGAACCAGATTCAACCCAAGGGCTTAAACCTCAGCGGTCCCTTGCCGCAGAACCTGAACCAGCTCACCATGCTCTTCAACTTGGGCCTCCAGAACAACAGGCTCAACGGCCCATTACCCTCCTTCCGCGGTCTGTCAAAGCTCAAATACGCCTACCTCGACAACAACAACTTCGACTCCATCCCTTCAGATTTCTTCGACGGCCTCCAGAGTCTAGAAGTTTTGGCCTTGGACCATAATAACCTCAACGCCAGCACCGGCGGCTGGCAGTTACCCGAAACTCTCCAGGAGTCAACGCAGTTGACCAATTTCTCTTGTATGGGCTGCAACCTCACCGGCCCAATACCTCAATTTCTCGGCTCCATGAACTCACTGTCGTTTTTGAAGCTCTCTAACAACTACTTAACGGGTGACATTCCCCGGAGTTTAAACGACTCTGCGTTGCAGGTTCTGTGGCTGAACAACCAGCAGGGAGAGCGTCTCAGTGGGGGAATTGATGTTGTGGCTTCTATGGTTTCTCTCACGAGTTTGTGGCTTCACGGAAACGCTTTCACTGGGACGATCCCCGAGAACATTGGGGCTTTGAGCTCTTTGAAGGAGCTCAACCTTAATGGGAACAACCTCGTTGGGTTGGTTCCTCGAGGTTTGGGTGACATGAAGCTGGGCAAGCTGGATTTGAACAATAACCATTTTATGGGTCCGATTCCGGATTTTAAAGCGGCTACTGTGTCGTATGATGTTAATAATTTTTGTGTGAGCAAACCGGGGGTTCCTTGCGCGTTTGAGGTGATGGCGTTGTTAGGGTTTCTTGGTGGGTTGAATTATCCTCTGAATTTGGTTGATTCGTGGACTGGGAATGATCCTTGTGGGGGGAATTGGTTGGGGATAAAGTGTAATGCTGATGGAAAGGTGATTATGATTAATTTGCCTAATTTGAATCTTAGTGGGAGTTTAAGTCCTTCTGTTGCGAACTTGGGTTCTCTCGTTGAGATTAGGTTGGGGGGGAATGATATTAGTGGTGTGGTGCCTGGTAATTGGACTAGTTTGGCATCTTTGAAATCGTTGGATCTGAGTGGGAACAACATTTATCCTCCACTGCCTGACTTTAAGACTGGATTGAAACCTGTTGTTGTGGGGAATCCTCTGTTAAATGGTGGAGCGAAAACTACTCCTTCGGGGAACAATAACCCGTCAACTGGATCTGGGAATGTTGACCCTTCAGGGAACACTAACTCGAATTCTAGTTCAAGTGATTCTCATGAAACTAAGAAATCCAAAAGGAAACAGTTGGTTTCGATTGTTGCTCCGATTGCGGGTGTGGCAGCTGCGGCTTTTCTGCTCATTCCGCTCTATGCATACTGTTTCAGGAGGAGGAACGGTGGCTTCCAGGCTCCAACTTCACTGGTAATTCACCCTAGGGATCCATCGGATTCGGACAGTGCTGTGAAGATTGCTGTTGCTAATAATACCAATGGAAGCATTTCCACTTTGACAGGGAGTGGGTCTGGGAGTAGGAATAGTAGTGGAATTGGGGACTCTCACATCATTGAAGCTGGAAATCTAAGGATATCAGTTCAGGTTCTGAGGAAAGTGACCGAGAACTTTGCGCCTGAGAATGAGCTTGGCCGTGGTGGATTTGGGGTTGTTTATAAGGGGGAGTTGGATGATGGTACTAAAATTGCAGTGAAACGAATGGAAGCAGGTGTGATTAGTAGTAAGGCCTTGGATGAATTCCAGTCTGAGATTGCAGTTCTATCGAAAGTCCGACACCGGCATCTGGTGTCTCTTTTGGGTTATTCTACAGAGGGTAATGAAAGAATTCTAGTGTACGAGTATATGCCACAAGGGGCTCTCAGTAAGCATCTTTTCCATTGGAAGAGCCATGATCTGGAGCCCCTCTCTTGGAAGAGGAGACTCAATATTGCCTTGGATGTTGCCAGagggatggagtatctccatactctggctcaccaaagcttcattcacagagatcttaagccgtcaaatatcttgcttgctgatgatttcaaagcaaaagtctccgattttgggttggtaaaacttgctcctgaaggggaaaaagcatctgtagtgacccggcttgcagggacgtttggatatttggCGCCAGAATATGCAGTGACAGGAAAAATCACTACCAAAGCAGATGTTTTCAGTTTTGGGGTTGTGCTAATGGAGTTGTTGACTGGATTAATGGCACTTGATGAGGATAGACCTGAGGAAAGCCAATACTTGGCAGCATGGTTCTGGCATATAAAATCAGATAAGAAGAAACTAATGGCTGCTATCGATCCTGCCCTTGATGTAAAAGAAGAAACATTTGAGAGCGTCTCCATCATTGCTGAGCTAGCAGGGCACTGCACTGCAAGAGAACCAAGCCAACGGCCAGATATGGGTCATGCCGTGAATGTGTTGGCACCGCTTGTCGAAAAATGGAAACCCTTTGATGATGACACCGAGGAGTATTCCGGCATTGATTATAGCCTTCCCCTTAACCAGATGGTGAAGGGATGGCAAGAGGCAGAAGGAAAGGACTTAAGTTATATGGACCTTGAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTACTGGATTTGCAGATTCTTTTACTTCTGCTGATGGCCGGTGA 2838 0.4489 MLHPSLTLLLLLLLFHPNAGDPNDAKILRQLRNGLDNPEQLPWPDEGDDPCGWKYIFCDSNKRVNQIQPKGLNLSGPLPQNLNQLTMLFNLGLQNNRLNGPLPSFRGLSKLKYAYLDNNNFDSIPSDFFDGLQSLEVLALDHNNLNASTGGWQLPETLQESTQLTNFSCMGCNLTGPIPQFLGSMNSLSFLKLSNNYLTGDIPRSLNDSALQVLWLNNQQGERLSGGIDVVASMVSLTSLWLHGNAFTGTIPENIGALSSLKELNLNGNNLVGLVPRGLGDMKLGKLDLNNNHFMGPIPDFKAATVSYDVNNFCVSKPGVPCAFEVMALLGFLGGLNYPLNLVDSWTGNDPCGGNWLGIKCNADGKVIMINLPNLNLSGSLSPSVANLGSLVEIRLGGNDISGVVPGNWTSLASLKSLDLSGNNIYPPLPDFKTGLKPVVVGNPLLNGGAKTTPSGNNNPSTGSGNVDPSGNTNSNSSSSDSHETKKSKRKQLVSIVAPIAGVAAAAFLLIPLYAYCFRRRNGGFQAPTSLVIHPRDPSDSDSAVKIAVANNTNGSISTLTGSGSGSRNSSGIGDSHIIEAGNLRISVQVLRKVTENFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISSKALDEFQSEIAVLSKVRHRHLVSLLGYSTEGNERILVYEYMPQGALSKHLFHWKSHDLEPLSWKRRLNIALDVARGMEYLHTLAHQSFIHRDLKPSNILLADDFKAKVSDFGLVKLAPEGEKASVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMAAIDPALDVKEETFESVSIIAELAGHCTAREPSQRPDMGHAVNVLAPLVEKWKPFDDDTEEYSGIDYSLPLNQMVKGWQEAEGKDLSYMDLEDSKSSIPARPTGFADSFTSADGR 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01857 945 Gene3D Phosphorylase Kinase; domain 1 564 675 - -
Gma03g01857 945 Gene3D Transferase(Phosphotransferase) domain 1 676 895 - -
Gma03g01857 945 ProSitePatterns Protein kinases ATP-binding region signature. 604 626 IPR017441 GO:0005524
Gma03g01857 945 Pfam Protein tyrosine and serine/threonine kinase 601 873 IPR001245 GO:0004672|GO:0006468
Gma03g01857 945 SUPERFAMILY Protein kinase-like (PK-like) 574 875 IPR011009 -
Gma03g01857 945 Coils Coil 942 945 - -
Gma03g01857 945 CDD STKc_IRAK 604 878 - -
Gma03g01857 945 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Gma03g01857 945 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 7 945 - -
Gma03g01857 945 SMART serkin_6 598 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01857 945 MobiDBLite consensus disorder prediction 447 490 - -
Gma03g01857 945 Gene3D Ribonuclease Inhibitor 21 320 IPR032675 -
Gma03g01857 945 SMART LRR_typ_2 108 131 IPR003591 -
Gma03g01857 945 SMART LRR_typ_2 258 281 IPR003591 -
Gma03g01857 945 SMART LRR_typ_2 132 154 IPR003591 -
Gma03g01857 945 SMART LRR_typ_2 234 257 IPR003591 -
Gma03g01857 945 SMART LRR_typ_2 412 443 IPR003591 -
Gma03g01857 945 SMART LRR_typ_2 388 411 IPR003591 -
Gma03g01857 945 SMART LRR_typ_2 185 209 IPR003591 -
Gma03g01857 945 Pfam Leucine rich repeat N-terminal domain 22 59 IPR013210 -
Gma03g01857 945 Pfam Leucine rich repeat N-terminal domain 326 362 IPR013210 -
Gma03g01857 945 SUPERFAMILY L domain-like 22 301 - -
Gma03g01857 945 ProSiteProfiles Protein kinase domain profile. 598 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01857 945 MobiDBLite consensus disorder prediction 448 481 - -
Gma03g01857 945 Pfam Leucine rich repeat 236 294 IPR001611 GO:0005515
Gma03g01857 945 MobiDBLite consensus disorder prediction 923 945 - -
Gma03g01857 945 Gene3D Ribonuclease Inhibitor 324 446 IPR032675 -
Gma03g01857 945 SUPERFAMILY L domain-like 325 436 - -
Gma03g01857 945 PANTHER OSJNBA0070M12.3 PROTEIN 7 945 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01857 Gma-Chr3 44510782 44514599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01857 74 880 Receptor kinase-like Gene Family AT5G07280 31.390 4.44e-82 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gma03g01857 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01857 - - gmx:100305366 1773.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01857 03 44510782 44514599 Gma03g01857 03 44510782 44514599 ECH
Gma03g01857 03 44510782 44514599 Gma10g00750 10 9765032 9768816 PCT
Gma03g01857 03 44510782 44514599 Gma02g01864 02 43176773 43180817 PCT
Gma10g00750 10 9765032 9768816 Gma03g01857 03 44510782 44514599 PCT
Gma02g01864 02 43176773 43180817 Gma03g01857 03 44510782 44514599 PCT