Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01828 ATGTCATCGATAAACCACTATTCACCGGAAACAACACTATACTGGACCAACGACCAACAGCAACAAGCCGCCATGTGGCTGAGTAATTCCCACACCCCGCGTTTCAATCTGAACGACGAGGAGGAGGAGGAGGAAGACGACGTTATCGTTTCGGACAAGGCTACTAATAACTTGACGCAAGAGGAGGAGAAGGTAGCCATGTTCGAGAAGCCGTTGACGCCGAGCGACGTCGGGAAGCTGAACCGGCTCGTGATTCCGAAACAGCACGCGGAGAAGCACTTCCCTCTCGACTCGTCGGCGGCGAAGGGGCTGTTGCTGAGTTTCGAGGACGAGTCCGGGAAGTGTTGGCGCTTCCGTTACTCTTATTGGAACAGTAGCCAGAGTTACGTTTTGACCAAAGGATGGAGCCGTTACGTCAAAGACAAACGCCTCCACGCTGGCGACGTCGTTTTGTTCCACAGACACCGCTCCCTCCCTCAACGCTTCTTCATCTCCTGCAGCCGCCGCCAACCCAACCCGGTCCCCGCTCACGTTAGCACCACCAGATCCTCCGCTTCCTTCTACTCTGCGCACCCACCTTATCCTGCGCACCACTTCCCCTTCCCATACCAACCTCACTCTCTTCATGCACCAGGTGGAGGGTCCCAAGGACAGAACGAAACGACACCGGGAGGGAACAGTAGTTCAAGTGGCAGTGGCAGGGTGCTGAGGCTCTTTGGTGTGAACATGGAATGCCAACCTGATAATCATAATGATTCCCAGAACTCCACACCAGAATGCTCCTACACCCACTTATACCACCATCAAACCTCTTCTTATTCTTCTTCTTCAAACCCTCACCATCACATGGTACCTCAACAACCATAA 867 0.5363 MSSINHYSPETTLYWTNDQQQQAAMWLSNSHTPRFNLNDEEEEEEDDVIVSDKATNNLTQEEEKVAMFEKPLTPSDVGKLNRLVIPKQHAEKHFPLDSSAAKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLHAGDVVLFHRHRSLPQRFFISCSRRQPNPVPAHVSTTRSSASFYSAHPPYPAHHFPFPYQPHSLHAPGGGSQGQNETTPGGNSSSSGSGRVLRLFGVNMECQPDNHNDSQNSTPECSYTHLYHHQTSSYSSSSNPHHHMVPQQP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01828 288 ProSiteProfiles B3 DNA-binding domain profile. 68 168 IPR003340 GO:0003677
Gma03g01828 288 MobiDBLite consensus disorder prediction 200 234 - -
Gma03g01828 288 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 19 263 - -
Gma03g01828 288 MobiDBLite consensus disorder prediction 211 234 - -
Gma03g01828 288 Pfam B3 DNA binding domain 68 166 IPR003340 GO:0003677
Gma03g01828 288 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 19 263 IPR044800 GO:0003700
Gma03g01828 288 SUPERFAMILY DNA-binding pseudobarrel domain 64 171 IPR015300 -
Gma03g01828 288 CDD B3_DNA 67 157 IPR003340 GO:0003677
Gma03g01828 288 Gene3D - 55 177 IPR015300 -
Gma03g01828 288 SMART B3_2 68 169 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01828 Gma-Chr3 44290675 44292336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01828 61 261 RAV Transcription Factor Family AT5G06250 49.541 1.28e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gma03g01828 B3 3e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01828 - - gmx:100802734 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01828 03 44290675 44292336 Gma03g01828 03 44290675 44292336 ECH
Gma19g01869 19 47884486 47886143 Gma03g01828 03 44290675 44292336 GST
Gma03g01828 03 44290675 44292336 Gma10g00698 10 7933076 7936031 PCT
Gma03g01828 03 44290675 44292336 Gma02g01904 02 44138028 44140697 PCT