Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01807 ATGCAAAAAATGCCAGGGACAAAGCAGAGAGATACATCCCAAAATCCAGACTCACCAGAGGGGAACAGTGAGCCTGAGAAACCTACAGATTCTGATGAGCGAGTAGACTTTGATGGGGACAATGATCAAGAGGAGACAATGGAGGAAGAAGTTGAGTATgaagaagtagaggaggaggaagaagaggaggaggaggaggaggaagaagaagaagaAGAAGAGACTAAGCTCTCAGATAAGACAAGAGTGGCAGACACTAAGGATGAAGTTGAGAAAAAGAAGCATGCTGAGCTTCTTGCACTTCCACCTCATGGGTCTGAGGTTTACATTGGGGGCATTCCTCAAAATGTTTCTGAAGAAGATTTGAGGGTCTTCTGTCAATCTGTGGGAGAAGTTTCAGAGGTTAGGATAATGAAGGGAAAAGAATCCGGTGAAGCAAAAGGTTATGCTTTTGTGACCTTCATGACAAAGGAATTGGCATCTAAGGCTATTGAGGAGCTGAACAACTCTGAATTTAAGGGAAAAAGAATAAAGTGCTCCACATCTCAAGTTAAGCACAAGTTGTTCATTGGTAATGTTCCTAAATATTGGACTGAAGGAGATATGAAAAAAGTTGTTGCTGAAATTGGCCCTGGAGTAATTTGTGTGGAACTGTTGAAGgacccacagaattctagccgtaaccggggatatgcttttatagagtattacaatcatgcttgtgcagagtattcaaggcagaagatgtcaaactcaaactttaaacttggcagcaatgctccaacggtgagctgggctgatccaaggaattctgaatcatctgcaatctctctgGTAAAATCAGTGTATGTAAAGAACCTTCCAGAAAACATTACTCAGGATCGTCTCAAGGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGTTCTCCCTTCTGCTAAATCGGGTCAAGAAAAGAGCAGATTTGGTTTTGTTCACTTTGCTGAAAGGTCAAGTGCCATGAAGGCTTTGAAGAACACAGAGAAATATGAAATTGATGGACAATTGCTGGAGTGTTCGCTAGCAAAGCCACAAGCAAATTCACAAAAACCAGCTTTACTTCCCACTTATCCACCTCATCTTGGTTATGGTATGGTTGGTGGTGCTATAGGTGCAGGATATGGTGCTGCTGGCTTTGCACAACCACTGATGTATGGTCCCGGACCAACCCCTGGTGGCATGGCAATGATGCCAATGATGTTATCAGATGGAAGGATTGCATACATAGTGCAACAGCCAGGGTTTCAACAGCCTGCCCCAGTATCCCGACATGGGAGGAGTGGTGGCAGTAGCTCCAGTGGTGGGAAATGCAGTAATGATGATAATCGCAATCGTGGGCATGGCCGCTATCATCCCTACTAA 1404 0.3654 MQKMPGTKQRDTSQNPDSPEGNSEPEKPTDSDERVDFDGDNDQEETMEEEVEYEEVEEEEEEEEEEEEEEEEEETKLSDKTRVADTKDEVEKKKHAELLALPPHGSEVYIGGIPQNVSEEDLRVFCQSVGEVSEVRIMKGKESGEAKGYAFVTFMTKELASKAIEELNNSEFKGKRIKCSTSQVKHKLFIGNVPKYWTEGDMKKVVAEIGPGVICVELLKDPQNSSRNRGYAFIEYYNHACAEYSRQKMSNSNFKLGSNAPTVSWADPRNSESSAISLVKSVYVKNLPENITQDRLKELFEHHGKITKVVLPSAKSGQEKSRFGFVHFAERSSAMKALKNTEKYEIDGQLLECSLAKPQANSQKPALLPTYPPHLGYGMVGGAIGAGYGAAGFAQPLMYGPGPTPGGMAMMPMMLSDGRIAYIVQQPGFQQPAPVSRHGRSGGSSSSGGKCSNDDNRNRGHGRYHPY 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01807 467 PANTHER - 14 465 - -
Gma03g01807 467 MobiDBLite consensus disorder prediction 1 89 - -
Gma03g01807 467 SUPERFAMILY RNA-binding domain, RBD 280 363 IPR035979 GO:0003676
Gma03g01807 467 Coils Coil 43 80 - -
Gma03g01807 467 PANTHER GEO13361P1-RELATED 14 465 - -
Gma03g01807 467 MobiDBLite consensus disorder prediction 430 467 - -
Gma03g01807 467 Gene3D - 187 267 IPR012677 -
Gma03g01807 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 280 358 IPR000504 GO:0003723
Gma03g01807 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Gma03g01807 467 MobiDBLite consensus disorder prediction 35 74 - -
Gma03g01807 467 Gene3D - 29 186 IPR012677 -
Gma03g01807 467 SUPERFAMILY RNA-binding domain, RBD 103 271 IPR035979 GO:0003676
Gma03g01807 467 CDD RRM_SF 108 180 - -
Gma03g01807 467 SMART rrm1_1 187 264 IPR000504 GO:0003723
Gma03g01807 467 SMART rrm1_1 107 180 IPR000504 GO:0003723
Gma03g01807 467 SMART rrm1_1 281 354 IPR000504 GO:0003723
Gma03g01807 467 MobiDBLite consensus disorder prediction 75 89 - -
Gma03g01807 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Gma03g01807 467 MobiDBLite consensus disorder prediction 430 453 - -
Gma03g01807 467 MobiDBLite consensus disorder prediction 1 22 - -
Gma03g01807 467 Gene3D - 270 366 IPR012677 -
Gma03g01807 467 SMART rrm2_1 281 354 IPR003954 GO:0003676
Gma03g01807 467 SMART rrm2_1 107 180 IPR003954 GO:0003676
Gma03g01807 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 282 351 IPR000504 GO:0003723
Gma03g01807 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Gma03g01807 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01807 Gma-Chr3 44117525 44124881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01807 108 439 Eukaryotic Initiation Factors Gene Family AT4G34110 22.546 6.29e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01807 K13161 - gmx:100798476 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01807 03 44117525 44124881 Gma03g01807 03 44117525 44124881 ECH
Gma19g01846 19 47716180 47722968 Gma03g01807 03 44117525 44124881 GST