Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01775 ATGAAGGTCATCGCCGCCTACTTGCTCGCCGTTTTGGGAGGCAACGCAGCCCCTTCCGCCGATGACTTGAGGGACATCCTTGGCTCCGTTGGAGCTGACGCGAACGATGACAACATCAGCAACTTCTTGTCTGAAGTTAAGGGCAAAGACATTGTGGAGCTTATCGCCTCCGGTAGGGAAAAGCTGGCCTCCGTGCCTTCTGGCGGTGGCGCCGCCGTTGCCGTTGCTGCCGCTCCCGGCGGTGGCCCTGCTGCACCGGCTGCCGCCGAATCGAAGAAGGAGGAAAAGGTTGAAGAGAAGGAGGAATCGGATGACGATATGGGATTCAGTCTCTTTGATTAA 342 0.576 MKVIAAYLLAVLGGNAAPSADDLRDILGSVGADANDDNISNFLSEVKGKDIVELIASGREKLASVPSGGGAAVAVAAAPGGGPAAPAAAESKKEEKVEEKEESDDDMGFSLFD 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01775 113 MobiDBLite consensus disorder prediction 79 113 - -
Gma03g01775 113 Gene3D - 1 59 IPR038716 -
Gma03g01775 113 Pfam 60s Acidic ribosomal protein 18 112 - -
Gma03g01775 113 CDD Ribosomal_P2 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gma03g01775 113 Hamap 50S ribosomal protein L12 [rpl12]. 2 113 IPR027534 GO:0003735|GO:0005840|GO:0006414
Gma03g01775 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 113 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gma03g01775 113 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01775 Gma-Chr3 43890460 43891120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01775 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 69.912 4.12e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01775 K02943 - gmx:100817491 145.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01775 03 43890460 43891120 Gma03g01775 03 43890460 43891120 ECH
Gma19g01821 19 47508228 47510994 Gma03g01775 03 43890460 43891120 GST