Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01770 ATGGACTTCCATCTGAAGCAATGGAGAAACCAGCACGAGTCAGAGGAACAACATTCTACAAAGATGCCAAAACTTCTCCCTGAATCCCATCAACAACAACAGCCATCAGCCTCTGCACTCCCTTTGTTTGTACCTGAACCCAACAGCAGCAAAGTCAGCACCCTGTCAGATTCAACATTAGCTTCTGCTACAATGACTTCTACCACCACTAACAGATTATTTCCCAGGATGGGGAGCTACTTCAGCTTGTCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTCAGGTACATGTTGGCTGGTGCTGCTGTTCCTCCTGAACTCCTTCAACCAATCAAGAAAAGCCTTCTTCATTCTCCACACTATTACCTCCATCACCCTCTCCAACATTACCAACCTTCTGCTTTGTTGCAATCAGGGTATTGGGGTAGAGGAGCGATGgatccggagccagggcggtgccggagaaccgacggcaagaagtggcgctgttcgagggacgtggtggctgggcaaaagtactgtgagcgccacatgcaccgtggaagaaaccgttcaagaaagcctgtggaaCTACCCACACCAACTAGTGCTATTAACAATTGTGGTGTAACTGGAGTTGGATCCCTAGGACCAGGTGCTTCATCATCTTCCATTTGTTCACCACCCTTAGCTTCTGCTTCATTCAAATCTCCTTTTGATCTTCATCTTGATGAACGTTCCTCTGGGACCAAGAATGAAGACGAAGATCATGTGGGTGGGGATGGCAGATCAGGTGGAGGTGGTGGCCATATGCTGAGGCATTTCTTCGATGATTGGCCACGATCACTCCAAGACTCTGACAACGTTGAAAACAATGCTGCTGCTGGCCGTAGCCTCTCTATTTCAATGCCCGGTGCTTCCTCGGATGTGTCATTGAAATTGTCCACGGGCTATGGAGAGGACTCGGGCCCAGGAAATGAGAATGTAAGCCTCGAGCCAGAGCAGCTGCAGTTGAATTGGGCCGGAGGATGGGCCTCGTCTAATCAAGTGGCTTCGATGGGAGGTCCACTTGCTGAGGCACTCAGATCATCTACTTCAACCTCATCTCCCACTAGTGTTTTGCATCGTCACTTGCCTCGTGGATCTGAGACCAGCTTTATTAGCACCTGA 1155 0.4303 MDFHLKQWRNQHESEEQHSTKMPKLLPESHQQQQPSASALPLFVPEPNSSKVSTLSDSTLASATMTSTTTNRLFPRMGSYFSLSQWQELELQALIFRYMLAGAAVPPELLQPIKKSLLHSPHYYLHHPLQHYQPSALLQSGYWGRGAMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVELPTPTSAINNCGVTGVGSLGPGASSSSICSPPLASASFKSPFDLHLDERSSGTKNEDEDHVGGDGRSGGGGGHMLRHFFDDWPRSLQDSDNVENNAAAGRSLSISMPGASSDVSLKLSTGYGEDSGPGNENVSLEPEQLQLNWAGGWASSNQVASMGGPLAEALRSSTSTSSPTSVLHRHLPRGSETSFIST 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01770 384 ProSiteProfiles WRC domain profile. 149 193 IPR014977 -
Gma03g01770 384 ProSiteProfiles QLQ domain profile. 80 115 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma03g01770 384 MobiDBLite consensus disorder prediction 236 256 - -
Gma03g01770 384 MobiDBLite consensus disorder prediction 1 42 - -
Gma03g01770 384 MobiDBLite consensus disorder prediction 1 23 - -
Gma03g01770 384 MobiDBLite consensus disorder prediction 236 263 - -
Gma03g01770 384 Pfam WRC 150 192 IPR014977 -
Gma03g01770 384 SMART QLQ_2 79 115 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma03g01770 384 MobiDBLite consensus disorder prediction 24 39 - -
Gma03g01770 384 MobiDBLite consensus disorder prediction 356 370 - -
Gma03g01770 384 MobiDBLite consensus disorder prediction 356 384 - -
Gma03g01770 384 PANTHER - 11 383 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gma03g01770 384 PANTHER GROWTH-REGULATING FACTOR 3 11 383 - -
Gma03g01770 384 Pfam QLQ 81 113 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01770 Gma-Chr3 43802417 43805419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01770 1 371 GRF Transcription Factor Family AT3G52910 49.747 8.11e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gma03g01770 WRC 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01770 - - gmx:100816436 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01770 03 43802417 43805419 Gma03g01770 03 43802417 43805419 ECH
Gma19g01816 19 47452135 47455112 Gma03g01770 03 43802417 43805419 GST
Gma03g01770 03 43802417 43805419 Gma10g00620 10 6723157 6726188 PCT
Gma03g01770 03 43802417 43805419 Gma13g01311 13 27641471 27644196 PCT
Gma10g00620 10 6723157 6726188 Gma03g01770 03 43802417 43805419 PCT
Gma13g01311 13 27641471 27644196 Gma03g01770 03 43802417 43805419 PCT