Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01760 ATGAACTCGTCTCCGTCTTCTTCCCAGTTACCTTCATCAAGCGCTGATTTTGACAAGTTTAATAGTTTGCCGCGCTTCCGCCCACTTGAATGCTTGCAAGGGAACCCGGTTCCGGCGTTCCTGTCCAAGACTTTCGAACTCGTCGACGATCCCTCGCTGGATCCGATCATATCCTGGGGCTCCACCGGTGTTAGCTTCGTGGTGTGGGATCCTACCCTGTTTGCAAGACACGTCTTGCCGAGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGTTAAATACCTATGGATTCCGCAAGATTGACACTGAAAAATGGGAGTTTTTCAATGAAGCTTTCCAGCGAGGAAAGAGACATCTTCTGAAGAACATCCGGAGGCGCGGGCCACCTCAGTCCCATCAGGTTGGTGGCAATATTGTGCCTTATTCCGATGCAGATAAGGCCGGGCTTGAATTTGAGCTAGAAAGTCTAAGGAAAGAAAGGAGTGTGCTAATGCAAGAGGTGGTTGAGTTGCAACAACAGCAGAGAACGACACTTCAACGTGCGAGACAGGTGAATCAGAGGCTTCAATCTGCAGAACTGATACAGAAACAAATGGTTTCTTTCTTGGCAAGGTTATTTGAAAAGCCAGCATTTTTAACCAGTCTCCAGCATGCGAAGGAACAAAGAGATTTAGGGTGTCCTAAAGTTAGAAGGAGATTTATCAACCAGCACCAAGGCCAAACAGAAATATCAGATTTTTTAAATGAAGGGCAGATTGTAAGATACCAACCTGATTGGAGAAATGTAACCACCTCTTCTGAAATACAAGAAATGTATCCAGTTTCACTTGAAGAGTCTCCAAATTACCTTTCTCAGGCTTTGGCAAAAGAATTTAGTGAAGGCACAGAGAATCTGATATCAGATGAAGTCATGTCAATTGCTGACACCATGGGGTTTAAGTCATCAAGCTTTGGACTTGATGGTAACCTTTTCAAAGGGAAAAATGTCATGAGCTCAAACGAAGGTCTTCTTGCAGAGGAGTTTGTGTCTTTCCCAGAGGATTTGACCAAGGAGACAGGATTTCCAGAGTTTTCACCTCTTGGAACTGAAGGCATCATCAAGCGAGAAGATAAACGGAACACCAACTTTGATGTTAGTGGTGCTGATTCAAGCTCTGGGAATGAACAGTGGGGAAATCCTATCAATTATGAAGTGCCAGAATTTGTAGTCACAAGTGgagagaatctctctgctgccaaggcaattgctgctgctgtttgtgctaacattatagaggttccaagtgatcaaaaactgccatctctttacctcttagacagtattgttaagaacatcggacgggattatataaagtattttgcttccagactacctgaggtattctgcaaggcttacagacaggttgatccttgtgtgcattcaagtatgaaacatctttttggaacttggaaaggagtctttcctcctcagtcccttcagatgattgagaaggaacttggctttgcacctgcagtcaatggttcggcttcagtgtctgctacagtcaggagtgatttgcagtcacaacgcccacctcatagtatccatgtgaatcccaagtatttagaaaggcagcgtcttcagcagtcaagtaggagcaaaggagtagttagtgatatgactggagctgttttaaactcaaatgaggattcggagaggccagatagagctgctgcacgaccctggctggatccgaggattaacatgcttaataatcagcacacacacagagatgcatttaatgattctgttactgaaaagagcattgatggatcatacggaagcagtgaatatagttctgtcatttcaagtaatttggtctcaggggctggaagaactggaagtaagctcattgatttaggacatgacaaaacatggttcaaaacagatgggggtgatgcagatactacatctgggcaaagaaatggttttggtctcaagcgtagtttttcaaatcaagaagcaccaaagtccatgaatttggatgcacatcgtcagccaagacaaagcataactaacttacggaacaatgtgatgtcaggtaactggaaaacttctgaagaagagttcacgcgggatgagatgaacaatggtttgattgatcatggacccaatgtattaagaaatttgagcacagacacatggatggctgatgatgaaaatttggaaggtgaagatcacctccacctccaaatcacacgcccaattgggacaaagagaactcaatcatcaccaatttgGATAATGATTAATGGTATGCTTCTATAG 2316 0.2379 MNSSPSSSQLPSSSADFDKFNSLPRFRPLECLQGNPVPAFLSKTFELVDDPSLDPIISWGSTGVSFVVWDPTLFARHVLPRNFKHNNFSSFVRQLNTYGFRKIDTEKWEFFNEAFQRGKRHLLKNIRRRGPPQSHQVGGNIVPYSDADKAGLEFELESLRKERSVLMQEVVELQQQQRTTLQRARQVNQRLQSAELIQKQMVSFLARLFEKPAFLTSLQHAKEQRDLGCPKVRRRFINQHQGQTEISDFLNEGQIVRYQPDWRNVTTSSEIQEMYPVSLEESPNYLSQALAKEFSEGTENLISDEVMSIADTMGFKSSSFGLDGNLFKGKNVMSSNEGLLAEEFVSFPEDLTKETGFPEFSPLGTEGIIKREDKRNTNFDVSGADSSSGNEQWGNPINYEVPEFVVTSGENLSAAKAIAAAVCANIIEVPSDQKLPSLYLLDSIVKNIGRDYIKYFASRLPEVFCKAYRQVDPCVHSSMKHLFGTWKGVFPPQSLQMIEKELGFAPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQQSSRSKGVVSDMTGAVLNSNEDSERPDRAAARPWLDPRINMLNNQHTHRDAFNDSVTEKSIDGSYGSSEYSSVISSNLVSGAGRTGSKLIDLGHDKTWFKTDGGDADTTSGQRNGFGLKRSFSNQEAPKSMNLDAHRQPRQSITNLRNNVMSGNWKTSEEEFTRDEMNNGLIDHGPNVLRNLSTDTWMADDENLEGEDHLHLQITRPIGTKRTQSSPIWIMINGMLL 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01760 771 Pfam CID domain 414 496 IPR006569 -
Gma03g01760 771 Coils Coil 149 176 - -
Gma03g01760 771 SUPERFAMILY ENTH/VHS domain 409 506 IPR008942 -
Gma03g01760 771 ProSiteProfiles CID domain profile. 410 506 IPR006569 -
Gma03g01760 771 SUPERFAMILY "Winged helix" DNA-binding domain 35 129 IPR036390 -
Gma03g01760 771 Gene3D - 33 130 IPR036388 -
Gma03g01760 771 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 404 749 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gma03g01760 771 PRINTS Heat shock factor (HSF) domain signature 40 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma03g01760 771 PRINTS Heat shock factor (HSF) domain signature 91 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma03g01760 771 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma03g01760 771 SMART 558neu5 398 503 IPR006569 -
Gma03g01760 771 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 404 749 - -
Gma03g01760 771 MobiDBLite consensus disorder prediction 542 564 - -
Gma03g01760 771 CDD CID_Pcf11 426 495 - -
Gma03g01760 771 Gene3D - 400 503 IPR008942 -
Gma03g01760 771 SMART hsfneu3 36 129 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma03g01760 771 MobiDBLite consensus disorder prediction 542 572 - -
Gma03g01760 771 Pfam HSF-type DNA-binding 40 129 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma03g01760 771 ProSitePatterns HSF-type DNA-binding domain signature. 79 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01760 Gma-Chr3 43676919 43685831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01760 20 404 HSF AT5G03720 45.780 1.40e-89 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma03g01760 CID 9.8e-11 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01760 K09419 K14400 gmx:100788429 783.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01760 03 43676919 43685831 Gma03g01760 03 43676919 43685831 ECH
Gma19g01809 19 47292486 47332586 Gma03g01760 03 43676919 43685831 GST