Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01741 ATGGAATTGAAAGAAAGAGATCTAGACAGGGAACTGGAGACAGATATGGATTGGCATCACGGCACAAAGCCACTTGTTCCTCGGCCAGAGACCTTAAGCTTCTTCTACAACTATAACTACAACAGTCCATATCCAGGAGTGGAAGTGAAACAAGCAGCATTGATGGAGACAGGAGAAGGGTCAGTTCCAGCATTAATGGACAGCAGAAACAAAGAGAAGAAGAAGCGATTAACAAATAACCAGATAGAGTTATTGGAGAGGAGTTTTCAGGAGGAGATAAAGTTGGACCCTGAAAGGAAGATGAAGCTTTCCAGGGAGCTAGGCCTTCAGCCTCGCCAAATCGCCGTTTGGTTCCAAAATAGACGAACAAGGTGGAAGACCAAGCAGCTTGAGCACTTGTACGATGTGCTTAAACACCAATATGATGTCGTCTCCAACGAAAAGCAAAAGCTTCAAGAAGAGGTTATGAAGTTGAAGGCAATGCTAAGTAAAGAGCAAGGTTTTGGGAAGCAAACATTTGGCTGTTATACAGAAATATCAGGGGAAGAAACAGTAGAAAGCACGTCAGAGGGTCTAACTCTAAGGGGAAAGAGTAACATTGAGCACGTTGCAGATCAAGGCTACTGTTCTTTCACTGTGGAGGATTATAACACCACTGTTTCACTGCCTCCTCACTGTCACTGGCCTGCTGTGCCTTATTAG 702 0.443 MELKERDLDRELETDMDWHHGTKPLVPRPETLSFFYNYNYNSPYPGVEVKQAALMETGEGSVPALMDSRNKEKKKRLTNNQIELLERSFQEEIKLDPERKMKLSRELGLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVVSNEKQKLQEEVMKLKAMLSKEQGFGKQTFGCYTEISGEETVESTSEGLTLRGKSNIEHVADQGYCSFTVEDYNTTVSLPPHCHWPAVPY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01741 233 CDD homeodomain 71 129 IPR001356 GO:0003677
Gma03g01741 233 Gene3D - 66 135 - -
Gma03g01741 233 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 16 230 IPR045224 GO:0003700
Gma03g01741 233 SUPERFAMILY Homeodomain-like 59 130 IPR009057 -
Gma03g01741 233 ProSiteProfiles 'Homeobox' domain profile. 68 128 IPR001356 GO:0003677
Gma03g01741 233 Coils Coil 68 88 - -
Gma03g01741 233 PRINTS Lambda-repressor HTH signature 99 108 IPR000047 GO:0003677
Gma03g01741 233 PRINTS Lambda-repressor HTH signature 108 124 IPR000047 GO:0003677
Gma03g01741 233 ProSitePatterns 'Homeobox' domain signature. 103 126 IPR017970 GO:0000981|GO:0006355
Gma03g01741 233 Coils Coil 134 161 - -
Gma03g01741 233 SMART HOX_1 70 132 IPR001356 GO:0003677
Gma03g01741 233 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 16 230 - -
Gma03g01741 233 Pfam Homeobox associated leucine zipper 128 162 IPR003106 GO:0006355|GO:0043565
Gma03g01741 233 Pfam Homeodomain 71 126 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01741 Gma-Chr3 43503463 43505284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01741 27 158 Homeobox Transcription Factor Family AT5G03790 55.556 5.18e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma03g01741 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01741 - - gmx:100806798 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01741 03 43503463 43505284 Gma03g01741 03 43503463 43505284 ECH
Gma19g01793 19 47160909 47162670 Gma03g01741 03 43503463 43505284 GST
Gma10g00594 10 6235080 6237197 Gma03g01741 03 43503463 43505284 PCT
Gma13g01284 13 27230177 27232157 Gma03g01741 03 43503463 43505284 PCT