Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01732 ATGGCGGTTCCTCCGTCGGTCGCCGCCGCTCCGGCGTCGCTCTACGTCGGCGACCTCCACCCCAACGTCTCCGACAACCACCTCGTCGACGCATTCTCCGACTTCGAGAGCCTCGCGTCTGTTCGCGTCTGCAAAGACTCCTCCACCGGCAAATCCCTCTGTTACGGTTACGTCAACTTCGTTTCCCCTCAAGACGCAATTCGTGCAATCGAGCTGAAAAATAACTCCACGCTGAATGGGAAAGCGATGAGGGTGATGTGGTCGCGTCGCGATCCTGATGCGAGGAAAAATGCTATAGGGAACTTGTTTGTTAAGaacttacctgaatcgatagataatactggactacaagatatgttcaaaaaatatggcaatattctgtccagcaaagtcgtcatgTCTGAGGATGGGAAGAGCAAAGGATACGGCTTTGTTCAATTTGAATCAGAAGAATCTTCAAATGTTGCCATCGAGAAGCTGAACGGCTCTACTGTTGGTGATAAGCAGTTATATGTTGGGAAGTTTGTCAAAAAAAGTGATCGCATTTTGCCTGGCCCTGATGCTAGATATACAAATTTGTACATGAAGAATTTGGACCTGGATGTTTCAGAAGCAACACTGCAGGAGAAATTTTCCTCTTTTGGGAAAATTGTTAGCTTGGTTATTGCAAAGGACAACATTGGAATGTCCAAGGGTTTTGGCTTTGTGAACTATGATAACCCAGATGATGCTAAAAAGGCAATGGAAGCAATGAATGGATCAAAATTAGGTTCTAAGATTCTGTATGTAGCCAGAGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCACCACCAATTTGAGGAGAAGCGGAAGGAACAAATCTTGAAATACAAGGGATCGAACATTTATGTGAAGAACATTGATGACCATGTAAGTGATGAAGAACTGAGGGATCATTTTAGTGCATGTGGCATTATAACTTCTGCAAAAATTATGCGAGACGACAAAGGGATAAGTAAAGGGTTCGGCTTTGTCTGCTTCTCCACTCCTGAGGAGGCCAATAAAGCTGTGAACACATTTCATGGATTCATGTTTCATGGTAAACCACTATATGTTGCTCTTGCTCAGAGGAAAGAGGATAGGAAAGCACAATTGCAGCTCCAGTATGCACAGCAAGTGGCAGGACTATCTGGACCATCAACTGCCATTATCCCTGGTGGATATCCTCCTTACTACTATGCAGCTACTGGTGTTATTTCACATGTGCCTCCTCGAGCTGGGCTGATGTATCAACATCTGCCAATGAGGCCAGGATGGGGGGCTAATGGCTTTGCACTCCCTGCTAGATCATTCCAACAATCACCAGTTCCTGCAGTTTCTAACAATACCAGGCAGCATAGGCAAAACAGGGGAAGGTTGAATGGGAATCCAATAGCACAGGGAAATACTCACTCTGTTACTTATTTACCACAAGCCCAGCAGATTTCTCAGCCAGTGATCTCTTCAAGTACTCAGCAGAGAACCGGACAGGCTAAGTACTTACCTAGTGGACGCCAGCGTGACATGGAAAAAGGATCTGGATCCTCATCTAGTGGTTCAAACTCTGGCAGAGGGTCCCAGGGGTCAGAAATGCTGCATAGCATGCTTGCTGGTGCTGCTCCTGAGCAGCAGAAAGAGATTCTCGGGGAGCATCTTTACATGCTTGTTCATAAACTAAAGCCTACCCTAGCAGCCAAAATAACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAATCGCCAGAGTCTCTTTCTGCCAAGGTGGAAGAAGCTGTCCAAGTGCTTAAGAACTCTAAGACCAAAGTTTCTGGCCAGGACGTACTTCATTCAAATTTCCTTTCAGCTGAGGTTGCAGTTAACTGA 1899 0.4434 MAVPPSVAAAPASLYVGDLHPNVSDNHLVDAFSDFESLASVRVCKDSSTGKSLCYGYVNFVSPQDAIRAIELKNNSTLNGKAMRVMWSRRDPDARKNAIGNLFVKNLPESIDNTGLQDMFKKYGNILSSKVVMSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGPDARYTNLYMKNLDLDVSEATLQEKFSSFGKIVSLVIAKDNIGMSKGFGFVNYDNPDDAKKAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEKRKEQILKYKGSNIYVKNIDDHVSDEELRDHFSACGIITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYAQQVAGLSGPSTAIIPGGYPPYYYAATGVISHVPPRAGLMYQHLPMRPGWGANGFALPARSFQQSPVPAVSNNTRQHRQNRGRLNGNPIAQGNTHSVTYLPQAQQISQPVISSSTQQRTGQAKYLPSGRQRDMEKGSGSSSSGSNSGRGSQGSEMLHSMLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDVLHSNFLSAEVAVN 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01732 632 SUPERFAMILY RNA-binding domain, RBD 184 274 IPR035979 GO:0003676
Gma03g01732 632 Pfam Poly-adenylate binding protein, unique domain 543 607 IPR002004 GO:0003723
Gma03g01732 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Gma03g01732 632 Coils Coil 263 283 - -
Gma03g01732 632 MobiDBLite consensus disorder prediction 516 536 - -
Gma03g01732 632 CDD RRM2_I_PABPs 99 174 IPR045305 -
Gma03g01732 632 PANTHER RNA BINDING PROTEIN 532 617 - -
Gma03g01732 632 PANTHER RNA BINDING PROTEIN 5 510 - -
Gma03g01732 632 SUPERFAMILY PABC (PABP) domain 539 618 IPR036053 GO:0003723
Gma03g01732 632 PANTHER POLYADENYLATE-BINDING PROTEIN 532 617 - -
Gma03g01732 632 CDD RRM4_I_PABPs 293 371 - -
Gma03g01732 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Gma03g01732 632 SMART poly_2 547 610 IPR002004 GO:0003723
Gma03g01732 632 Gene3D - 3 99 IPR012677 -
Gma03g01732 632 Gene3D - 181 274 IPR012677 -
Gma03g01732 632 Gene3D - 275 382 IPR012677 -
Gma03g01732 632 SMART rrm2_1 295 367 IPR003954 GO:0003676
Gma03g01732 632 SMART rrm2_1 101 173 IPR003954 GO:0003676
Gma03g01732 632 SMART rrm2_1 13 86 IPR003954 GO:0003676
Gma03g01732 632 SMART rrm2_1 192 264 IPR003954 GO:0003676
Gma03g01732 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Gma03g01732 632 SUPERFAMILY RNA-binding domain, RBD 13 179 IPR035979 GO:0003676
Gma03g01732 632 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 608 IPR006515 GO:0003723
Gma03g01732 632 Gene3D - 533 625 - -
Gma03g01732 632 SMART rrm1_1 192 264 IPR000504 GO:0003723
Gma03g01732 632 SMART rrm1_1 101 173 IPR000504 GO:0003723
Gma03g01732 632 SMART rrm1_1 295 367 IPR000504 GO:0003723
Gma03g01732 632 SMART rrm1_1 13 86 IPR000504 GO:0003723
Gma03g01732 632 MobiDBLite consensus disorder prediction 490 536 - -
Gma03g01732 632 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Gma03g01732 632 MobiDBLite consensus disorder prediction 449 477 - -
Gma03g01732 632 MobiDBLite consensus disorder prediction 490 507 - -
Gma03g01732 632 Gene3D - 100 180 IPR012677 -
Gma03g01732 632 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 535 612 IPR002004 GO:0003723
Gma03g01732 632 PANTHER POLYADENYLATE-BINDING PROTEIN 5 510 - -
Gma03g01732 632 SUPERFAMILY RNA-binding domain, RBD 291 386 IPR035979 GO:0003676
Gma03g01732 632 CDD RRM1_I_PABPs 13 92 - -
Gma03g01732 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Gma03g01732 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Gma03g01732 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Gma03g01732 632 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01732 Gma-Chr3 43431304 43435524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01732 12 630 Eukaryotic Initiation Factors Gene Family AT2G36660 53.994 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01732 K13126 - gmx:100804671 1174.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01732 03 43431304 43435524 Gma03g01732 03 43431304 43435524 ECH
Gma19g01782 19 47079358 47092238 Gma03g01732 03 43431304 43435524 GST
Gma03g01732 03 43431304 43435524 Gma10g00582 10 6111759 6116133 PCT
Gma03g01732 03 43431304 43435524 Gma13g01275 13 27113165 27116240 PCT
Gma10g00582 10 6111759 6116133 Gma03g01732 03 43431304 43435524 PCT
Gma13g01275 13 27113165 27116240 Gma03g01732 03 43431304 43435524 PCT