Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01708 ATGCAAAAGCAAGAGGAATTGAATGCCGAGTGCAAGGATCACATGCTAATCATCAAGGGCAAGCGCACGAAGCGACAAAGGCTTCCATCTCCACTTAGGTTAACCATGTCAACAACATGTTCCAGTTTAGGAGGAAGAAGCAGCACCGAAAATTCCCTAGGATTTGATCTACCAACAACCTCAAATGAATCAAGGAACGAAGAGGAAGACATGGCAAATTGTTTGATTCTCTTAGCTCAAGGTGATCGCAACAATAGTACCCCAAAACCCTCACACAACAACAAGGGGGGGTTATACCTTTATGAGTGCAAGACTTGTAACCGATGCTTCCCTTCATTTCAAGCCCTTGGTGGCCACAGAGCCAGCCACAAGAAATATTATTCCAAGGCAAGTGCAGAAGAAAAGCAAGGAGTTCTTGCAACTTTTGTGAATGAAGTGGATAATAATAATAATCATAATCATGATAATTATTATTGTGACACCACAAGCACCACCCTCACCTTACAATTATCAACGGCTTTGTATAATAATAATAATAGCAGCAGCAACACTAGGATGAGTACTATTAATGCTAAGTGTAAAGTTCATGAGTGTTCCATATGTGGGGCAGAATTTTCATCTGGGCAAGCCTTGGGGGGACACATGAGAAGGCATAGAAATTTTGGGAGTGCACCTACGTGTGGGGCAATTAATGCAAATAGAGAATCCAAGAAACACAACAAAGATGTTTTGAACTTGGACTTGAATCTTCCGGCACCTGAGGATGATCATCACAGAGAATCCAAGTTGTTTCCTTTTCAGGCCAAAGAAAAAGTTATTGTCTTCTCAGCAACTTCTTCTTTGGTGGATTGCCATTACTAA 861 0.4135 MQKQEELNAECKDHMLIIKGKRTKRQRLPSPLRLTMSTTCSSLGGRSSTENSLGFDLPTTSNESRNEEEDMANCLILLAQGDRNNSTPKPSHNNKGGLYLYECKTCNRCFPSFQALGGHRASHKKYYSKASAEEKQGVLATFVNEVDNNNNHNHDNYYCDTTSTTLTLQLSTALYNNNNSSSNTRMSTINAKCKVHECSICGAEFSSGQALGGHMRRHRNFGSAPTCGAINANRESKKHNKDVLNLDLNLPAPEDDHHRESKLFPFQAKEKVIVFSATSSLVDCHY 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01708 286 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Gma03g01708 286 ProSitePatterns Zinc finger C2H2 type domain signature. 198 218 IPR013087 -
Gma03g01708 286 PANTHER ZINC FINGER, C2H2-LIKE PROTEIN-RELATED 15 285 - -
Gma03g01708 286 Pfam C2H2-type zinc finger 101 125 - -
Gma03g01708 286 Pfam C2H2-type zinc finger 195 219 - -
Gma03g01708 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Gma03g01708 286 MobiDBLite consensus disorder prediction 35 61 - -
Gma03g01708 286 Gene3D Classic Zinc Finger 98 218 - -
Gma03g01708 286 MobiDBLite consensus disorder prediction 35 67 - -
Gma03g01708 286 SMART c2h2final6 101 123 IPR013087 -
Gma03g01708 286 SMART c2h2final6 196 218 IPR013087 -
Gma03g01708 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 218 IPR013087 -
Gma03g01708 286 SUPERFAMILY beta-beta-alpha zinc fingers 100 218 IPR036236 -
Gma03g01708 286 PANTHER ZINC FINGER PROTEIN ZAT5 15 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01708 Gma-Chr3 43256452 43257512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01708 1 286 C2H2 Transcription Factor Family AT2G28200 40.625 2.08e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g01708 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01708 - - gmx:100777739 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01708 03 43256452 43257512 Gma03g01708 03 43256452 43257512 ECH
Gma19g01758 19 46895445 46896305 Gma03g01708 03 43256452 43257512 ECH
Gma10g00543 10 5590845 5592009 Gma03g01708 03 43256452 43257512 ECH
Gma13g01255 13 26863900 26864766 Gma03g01708 03 43256452 43257512 ECH
Gma11g01579 11 16967680 16969026 Gma03g01708 03 43256452 43257512 ECH
Gma12g00726 12 6532347 6533294 Gma03g01708 03 43256452 43257512 ECH
Gma13g02863 13 43134543 43135859 Gma03g01708 03 43256452 43257512 ECH
Gma12g01686 12 37304460 37305861 Gma03g01708 03 43256452 43257512 ECH
Gma03g01708 03 43256452 43257512 Gma11g01579 11 16967680 16969026 ECH
Gma03g01708 03 43256452 43257512 Gma12g00726 12 6532347 6533294 ECH
Gma03g01708 03 43256452 43257512 Gma13g02863 13 43134543 43135859 ECH
Gma03g01708 03 43256452 43257512 Gma12g01686 12 37304460 37305861 ECH
Gma19g01758 19 46895445 46896305 Gma03g01708 03 43256452 43257512 GST
Gma03g01708 03 43256452 43257512 Gma10g00543 10 5590845 5592009 PCT
Gma03g01708 03 43256452 43257512 Gma13g01255 13 26863900 26864766 PCT
Gma10g00543 10 5590845 5592009 Gma03g01708 03 43256452 43257512 PCT
Gma13g01255 13 26863900 26864766 Gma03g01708 03 43256452 43257512 PCT