Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01705 ATGGAACCTCATCGTCACCTTTCAAAGAATGAACTTTCTAACAAGAAACCCCGCGTTGAGATCCCTCCATCCGAAATCGGATGTGGACATTACGGGTGCTCACATTATAAAAGGAGATGTAAGATCATAGCGCCGTGTTGCAATGAAATCTTCGATTGCAGATTTTGCCACAATGAATCTAAGAATTCAATTGAAGTCAAACTTGCTGACTGGCATGATATTTCTCGTCATGATGTGAAGAGGGTCATCTGTTCCTTGTGTGGCACAGAGCAAGATGTTCAACAGATGTGCATTAACTGTGGTGTTTGCATGGGCAGATACTTTTGCTCCAAATGCAAGTTTTTCGATGACGATTTATCAAAGAAACAATTCCATTGTGATGAATGTGGAATCTGCAGAAATGGAGGTGTAGAGAACATGTTCCACTGTAACACATGTGGATTTTGCTATTCATCATACTTGAAGGATAAACACAAATGTATGGAAAAAGCAATGCATACCAATTGCCCAATTTGCTTCGAGTTTCTTTTTGATACAACGAAAGCCATTGCTTTATTGGCATGTGGTCACAACATGCACCTAGGATGCATTAGACAATTGCAACAACGTTTAATGTATGCATGCCCAGTTTGTTCCAAATCATTTTGTGACATGTCAGTTATTTGGGAGAAAGTGGATGAGATTATTGAATCAAGGCCAATGCCTGAAGAATATCAAAATGTAAAGATTTGGATTCTTTGCAACGATTGCGTGGAAACATCTGAAGTAAGTTTTCATACTATGGCGCTCAAGTGCCCTAAATGCAAGTCCTATAATACCAGAAGGACTCAagctgcaccagctgaaccagctgcatcagctgaatcagctgaatcagctgcaccagctgaatcagATGCTTCTTCTAGTTCATCGAGGGTTGAATAG 927 0.3668 MEPHRHLSKNELSNKKPRVEIPPSEIGCGHYGCSHYKRRCKIIAPCCNEIFDCRFCHNESKNSIEVKLADWHDISRHDVKRVICSLCGTEQDVQQMCINCGVCMGRYFCSKCKFFDDDLSKKQFHCDECGICRNGGVENMFHCNTCGFCYSSYLKDKHKCMEKAMHTNCPICFEFLFDTTKAIALLACGHNMHLGCIRQLQQRLMYACPVCSKSFCDMSVIWEKVDEIIESRPMPEEYQNVKIWILCNDCVETSEVSFHTMALKCPKCKSYNTRRTQAAPAEPAASAESAESAAPAESDASSSSSRVE 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01705 308 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 19 284 - -
Gma03g01705 308 SMART ring_2 169 211 IPR001841 -
Gma03g01705 308 SUPERFAMILY RING/U-box 168 220 - -
Gma03g01705 308 Pfam zinc-RING finger domain 168 213 IPR001841 -
Gma03g01705 308 ProSiteProfiles Zinc finger CTCHY-type profile. 104 168 IPR017921 -
Gma03g01705 308 Pfam CHY zinc finger 33 114 IPR008913 GO:0008270
Gma03g01705 308 ProSiteProfiles Zinc finger RING-type profile. 169 212 IPR001841 -
Gma03g01705 308 MobiDBLite consensus disorder prediction 279 308 - -
Gma03g01705 308 ProSiteProfiles Zinc finger CHY-type profile. 26 102 IPR008913 GO:0008270
Gma03g01705 308 SUPERFAMILY CHY zinc finger-like 29 104 IPR037274 GO:0008270
Gma03g01705 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 19 284 - -
Gma03g01705 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 214 IPR013083 -
Gma03g01705 308 SUPERFAMILY Zinc hairpin stack 105 162 IPR037275 -
Gma03g01705 308 Gene3D - 240 280 - -
Gma03g01705 308 Pfam Zinc-ribbon 216 274 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01705 Gma-Chr3 43218690 43221335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01705 17 289 C2H2 Transcription Factor Family AT3G18290 40.143 1.82e-54 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01705 K10144 - gmx:100777215 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01705 03 43218690 43221335 Gma03g01705 03 43218690 43221335 ECH