Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01702 ATGCTCCTCCAAACAACCTGCATTTTTCTACTCTCAGTTCTTCTGAGCTCGTTTTCACCACTTGGAACAGCAATGCTCAACCTCACTCTTCCCGGAGCTCATCCTGACCCCGAAGCCGTTGCCCACGAAGTTCATAGGAAGGTTAATGCTTCAATCGCAAGAAGGGAAATGCTATCAGTGTCTGAAAAAGACGGGTCTTCGTGCCTAACGGGAAATCCCATCGATGATTGTTGGAAATGTGACCCAGATTGGCCAAATAACCGGCAGAGGCTAGCTGACTGCGTCATTGGGTTCGGTCAGTACGCAAAGGGAGGAAAAGGTGGTGAATTTTACGTTGTTACTGATTCCTCTGATGATGACCCTGTGAACCCAAAACCTGGCACGCTTAGATACGCAGTGATACAGAACGAGCCACTGTGGATCGTGTTCCCTAGTAACATGATGATTAAGCTGTCTCAGGAACTGATTTTTAACAGCTACAAGACCATTGATGGGCGTGGAGCTGATGTGCACATTGTGGGAGGAGGGTGCATTACTTTGCAGTTTATAAGCAATGTCATCATTCACAACATTCACATCCATCATTGTCATCCCTCAGGGAACACAAACGTTCGGTCAAGCCCGGAGCACTACGGATTCCGGACAGAATCAGACGGAGACGGCATCTCCATCTTCGGGTCGAAGGACATATGGATCGACCACTGCACCCTTTCACGGTGCAAGGACGGTCTGATCGACGCGGTGATGGGGTCCACAGGGATAACCATCTCCAACAACATGCTATCCCACCACAACGAGGTCATGCTACTCGGCCACAGCGACGACTACCTCCCTGACTCCGGAATGCAGGTCACCATCGCCTTCAACCACTTCGGGGAGAAGCTCGTCCAGCGCATGCCCCGCTGCCGGAGGGGATACATCCACGTCGTCAACAACGACTTCACCGAGTGGGAGATGTACGCCATTGGTGGCAGCGGCGAGCCCACCATAAACAGCCAGGGTAACCGTTACATGGCACCGGAAAACCCCTTCGCTAAGGAAGTTACTAAGAGAGTCGACACGCAACAGTCCAAGTGGAAGGGATGGAACTGGCGCTCCGAGGGTGACATTCTCCTGAACGGGGCCTTTTTTGTTGCGTCTGGTGAAGAACTTGAAGTTAAGTATGAGAAGGCATACAGCGTCCAACCCAAATCCGCTGATCGCATCTCTTTTCTCACCATGTCCGCAGGTGTTCTCGGTAATGCCAGGGACAACAACCTTGGCATGTGGAGCAGAGGACCTGCCGATGACACCACGGAGTCCGGAATGGAATACACGGATGACATGTCCACCACTGCAACAATGCTTCTGTCTTCTTTTTTGCTTCTCTTCTTCTTGTCTTACACGATATTACGCTTGACGGTTATTCTTTAA 1413 0.5096 MLLQTTCIFLLSVLLSSFSPLGTAMLNLTLPGAHPDPEAVAHEVHRKVNASIARREMLSVSEKDGSSCLTGNPIDDCWKCDPDWPNNRQRLADCVIGFGQYAKGGKGGEFYVVTDSSDDDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNMLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYMAPENPFAKEVTKRVDTQQSKWKGWNWRSEGDILLNGAFFVASGEELEVKYEKAYSVQPKSADRISFLTMSAGVLGNARDNNLGMWSRGPADDTTESGMEYTDDMSTTATMLLSSFLLLFFLSYTILRLTVIL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01702 470 SMART amb_all 146 343 IPR002022 -
Gma03g01702 470 Gene3D - 71 413 IPR012334 -
Gma03g01702 470 PANTHER PECTATE LYASE 18-RELATED 6 428 IPR045032 GO:0030570
Gma03g01702 470 PANTHER PECTATE LYASE 12-RELATED 6 428 - -
Gma03g01702 470 SUPERFAMILY Pectin lyase-like 67 399 IPR011050 -
Gma03g01702 470 Pfam Pectate lyase 155 331 IPR002022 -
Gma03g01702 470 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Gma03g01702 470 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Gma03g01702 470 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Gma03g01702 470 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Gma03g01702 470 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Gma03g01702 470 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Gma03g01702 470 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Gma03g01702 470 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01702 Gma-Chr3 43191269 43194435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01702 1 469 Polysaccharide Lyase AT3G53190 73.739 0.0 693
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01702 03 43191269 43194435 Gma03g01702 03 43191269 43194435 ECH
Gma03g01702 03 43191269 43194435 Gma13g01251 13 26824122 26829531 PCT
Gma13g01251 13 26824122 26829531 Gma03g01702 03 43191269 43194435 PCT