Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01687 ATGTCAAAAGATTCTGAGGAGATAAAAACCATTGAGCAGTGGAAATGGACCGAAATGCAAGGCCTTGAGCTTGTTCCTGAAGAGGGTGCTGCTGCTGCACCTTCACAACATCACCAACTTCCAATGGAAATGAACACTTCTGAACCACCCAACAAAGATGTTGTTGGTGCTTCTTCTTCTTCTGCAGCAGTTACTAATGGGGAGAAGAAAGAGAAAGAGAAAGAGAGTGTTCCCTCTGTTGGGTTTGGAGAGCTTTTCAGATTCGCTGATGGGTTGGACTACGTTCTCATGGGAATTGGAACCGTTGGAGCAGTTGTGCACGGTTGTTCTCTGCCTCTCTTTCTTCGCTTCTTTGCGGATCTTGTCAATTCCTTTGGCTCCAATGCTAATGATGTCGACAAGATGACTCAGGAAGTGGTCAAGTATGCATTTTACTTCCTGGTGGTGGGGGCTGCTATATGGGCTTCTTCATGGGCAGAGATTTCGTGTTGGATGTGGAGCGGGGAGCGGCAATCGACCACGATGAGAATCAAGTATCTAGAGGCTGCGTTGAACCAGGACATTCAGTTCTTCGACACCGAGGTTCGGACATCCGACGTGGTTTTCGCCATCAACACCGATGCTGTCATGGTCCAGGATGCCATTAGTGAGAAGTTGGGGAATTTCATTCACTACATGGCCACCTTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTTTGGTGACTCTTGCTGTTGTCCCTATGATAGCTGTGATTGGAGGCATTCACACCGCCACCTTGGCTAAGCTCTCTGGCAAGAGCCAGGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACGGTTGCACAAATCCGGGTAGTGTTAGCCTTTGTTGGGGAGTCCAGAGCATTGCAGTCTTATTCATCAGCCTTGAGGATCGCACAGAAGATTGGCTACAAAACTGGGTTTGCAAAGGGAATGGGATTGGGTGCTACTTACTTTGTTGTTTTCTGCTGTTACGCGCTTCTGCTGTGGTATGGAGGCTATCTGGTTAGGCACCACGCCACCAACGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATTGGTGGATTGGGTTTGGGGCAATCTGCACCAAGCATGGCTGCGTTTACAAAGGCCAGAGTTGCTGCTGCGAAGATTTTCCGTATAATTGATCACAAGCCGAATATTGATCGAAATAGTGAATCTGGCATCGAACTAGACACAGTTACTGGACTTGTGGAGCTGAAAAATGTTGACTTTTCTTATCCATCTAGGCCCGAGGTTCAGATCCTCAATGACTTCTCCTTGAATGTACCTGCCGGCAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCTGGCAAGAGCACCGTTGTATCCCTCATTGAGAGATTCTATGACCCAACTTCAGGACAAGTTCTGTTAGATGGGCATGACATTAAAACTTTGAAGCTTAGATGGTTGAGGCAGCAGATAGGACTAGTGAGCCAAGAGCCTGCATTGTTTGCGACCACAATACGAGAAAATATACTGTTGGGTAGGCCTGATGCAGACCAAGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCTCATTCCTTCATCATTAAACTTCCTGATGGCTATGAAACACAGGTAGGAGAAAGAGGGCTGCAACTTTCTGGAGGGCAAAAACAGAGAATAGCAATAGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGACGAGGCAACAAGTGCATTGGACTCAGAGTCAGAAAAGCTTGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCCGAACAACTCTTGTAATTGCCCATCGTCTCTCCACAATTCGCAAAGCTGACCTTGTAGCTGTACTTCAGCTAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTCTCGAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACTGCCGTGAATAATGCTAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGAAACTCCGTAAGCTCACCAATAATTGCTAGGAATTCTTCTTATGGACGGTCACCATACTCGCGTAGGCTATCTGATTTCTCTACATCTGATTTTAGTCTTTCCCTTGATGCTTCACATCCAAGTTACAGGCTTGAAAAGCTTGCTTTCAAAGAGCAAGCTAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTAATTGGCTCTATAGGGTCTGTAGTTTGTGGATCCCTTAGTGCCTTCTTTGCTTATGTTCTAAGTGCTGTCCTCAGTGTGTATTACAATCCAGACCACAGATACATGATCCGCGAAATAGAAAAGTACTGCTACTTGTTGATTGGCCTTTCATCAACTGCACTTCTCTTCAACACATTGCAACACTTCTTCTGGGACATTGTTGGGGAAAATCTTACCAAACGTGTGAGAGAGAAAATGCTGATGGCAGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCTGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCTGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCCTGTACAGCAGGATTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTCGTAGCTGTCTTTCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACCGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCCAAGGCTACACAACTTGCAGGAGAAGCTATAGCCAATGTAAGGACAGTTGCAGCCTTCAATTCAGAAACAAAAATTGTTGGCCTTTTCACCACCAATCTCCAAGCTCCACTACAGCGTTGTTTTTGGAAGGGACAAATTTCTGGAAGTGGATATGGTGTAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCATGGCATCTCTGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTAATGGTTTCTGCAAATGGTGCTGCTGAAACTTTAACACTGGCTCCTGACTTTATCAAAGGAGGCCAGGCCATGAGGTCAGTTTTCGAACTCCTTGACCGCAGAACTGAAATTGAGCCTGATGATCAAGATGCTACTCTTGTTCCTGATCGTCTTCGTGGTGAAGTTGAACTTAAGCATGTAGACTTCTCGTATCCAACTCGCCCGGATATGCCAGTTTTTCGTGACCTCAGTCTTCGTGCAAGAGCTGGTAAAACTCTTGCCCTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAATTATTGCACTTATACAAAGATTCTATGATCCAACATCTGGTCGGGTCATGATTGATGGCAAGGACATCAGGAAATACAACCTCAAGTCCTTAAGAAGGCACATTTCTGTGGTACCTCAGGAGCCATGCTTGTTTGCTACTACTATTTATGAAAACATCGCTTATGGGCATGAGTCAGCCACTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGGTTTGCCAGATGGATACAAAACATTTGTTGGGGAGAGAGGTGTTCAACTATCCGGGGGACAAAAGCAGAGAATAGCCGTTGCTCGGGCTTTTTTGAGGAAGGCTGAACTTATGCTTCTTGATGAGGCCACAAGTGCACTTGATGCTGAATCAGAGAGGTCTGTTCAGGAGGCTCTAGACCGCGCCTCCTCAGGAAAAACAACTATCATCGTTGCACATAGGCTATCAACAGTCAGGAATGCCAATCTGATTGCTGTGATTGATGATGGGAAAGTAGCCGAGCAAGGCTCCCATTCACAGTTGTTGAAAAATCACCCGGATGGGATTTATGCGCGCATGATTCAGTTACAAAGGTTCACACACAGCCAAGTCATTGGAATGGCCTCAGGTTCAAGCTCTTCAACAAGACCAAAAGATGATGAAAGAGAAGGCTAG 4029 0.4589 MSKDSEEIKTIEQWKWTEMQGLELVPEEGAAAAPSQHHQLPMEMNTSEPPNKDVVGASSSSAAVTNGEKKEKEKESVPSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSLPLFLRFFADLVNSFGSNANDVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTTMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTATLAKLSGKSQEALSQAGNIVEQTVAQIRVVLAFVGESRALQSYSSALRIAQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPNIDRNSESGIELDTVTGLVELKNVDFSYPSRPEVQILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPDGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQLGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAVNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPSYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLMAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFTTNLQAPLQRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGQAMRSVFELLDRRTEIEPDDQDATLVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSIIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESATEAEIIEAATLANAHKFISGLPDGYKTFVGERGVQLSGGQKQRIAVARAFLRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTVRNANLIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHSQVIGMASGSSSSTRPKDDEREG 1342
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01687 1342 Gene3D ABC transporter type 1, transmembrane domain 732 1041 IPR036640 GO:0005524|GO:0016021
Gma03g01687 1342 Gene3D ABC transporter type 1, transmembrane domain 1042 1319 IPR036640 GO:0005524|GO:0016021
Gma03g01687 1342 Gene3D ABC transporter type 1, transmembrane domain 84 673 IPR036640 GO:0005524|GO:0016021
Gma03g01687 1342 Pfam ABC transporter 1095 1243 IPR003439 GO:0005524
Gma03g01687 1342 Pfam ABC transporter 439 588 IPR003439 GO:0005524
Gma03g01687 1342 Gene3D - 1065 1316 IPR027417 -
Gma03g01687 1342 Gene3D - 411 661 IPR027417 -
Gma03g01687 1342 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 97 1319 IPR039421 -
Gma03g01687 1342 MobiDBLite consensus disorder prediction 39 65 - -
Gma03g01687 1342 ProSitePatterns ABC transporters family signature. 560 574 IPR017871 GO:0005524
Gma03g01687 1342 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1076 1312 IPR003439 GO:0005524
Gma03g01687 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 660 IPR027417 -
Gma03g01687 1342 MobiDBLite consensus disorder prediction 27 75 - -
Gma03g01687 1342 Pfam ABC transporter transmembrane region 98 371 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma03g01687 1342 Pfam ABC transporter transmembrane region 754 1023 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma03g01687 1342 CDD ABC_MTABC3_MDL1_MDL2 1076 1315 - -
Gma03g01687 1342 CDD ABC_6TM_Pgp_ABCB1_D2_like 742 1058 - -
Gma03g01687 1342 SMART AAA_5 448 634 IPR003593 -
Gma03g01687 1342 SMART AAA_5 1103 1295 IPR003593 -
Gma03g01687 1342 CDD ABC_MTABC3_MDL1_MDL2 421 660 - -
Gma03g01687 1342 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 421 657 IPR003439 GO:0005524
Gma03g01687 1342 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 753 1040 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Gma03g01687 1342 ProSitePatterns ABC transporters family signature. 1215 1229 IPR017871 GO:0005524
Gma03g01687 1342 SUPERFAMILY ABC transporter transmembrane region 740 1060 IPR036640 GO:0005524|GO:0016021
Gma03g01687 1342 CDD ABC_6TM_Pgp_ABCB1_D1_like 97 394 - -
Gma03g01687 1342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1067 1315 IPR027417 -
Gma03g01687 1342 MobiDBLite consensus disorder prediction 1323 1342 - -
Gma03g01687 1342 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 97 1319 - -
Gma03g01687 1342 SUPERFAMILY ABC transporter transmembrane region 85 405 IPR036640 GO:0005524|GO:0016021
Gma03g01687 1342 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 99 386 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma03g01687 Gma-Chr3 43042820 43048888 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01687 70 1337 Calmodulin-binding Proteins AT2G36910 89.362 0.0 2320
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01687 K05658 - gmx:100817829 2523.43
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01687 03 43042820 43048888 Gma03g01687 03 43042820 43048888 ECH
Gma19g01739 19 46696251 46703059 Gma03g01687 03 43042820 43048888 GST