Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01672 ATGGAAGCAACTACCATCACCAATGGGAGCCAAAACGGTTCGTTTTGCTTGTCCACTACTAAGGGAAGTAGTGATCCGTTAAACTGGGGAGCGGCGGCAGAGGCGATGAAGGGGAGCCACCTGGACGAGGTGAAGCGCATGGTGGCCGAGTACCGCAAGCCGGTGGTCCGGCTCGGCGGAGAGACGCTCACCATCGCTCAGGTGGCCGCCGTAGCCGGACACGACCTCGGTGTGGCGGTGGAGCTCTCAGAGTCTGCGAGAGAAGGAGTGAAGGCGAGCAGTGAGTGGGTGATGAACAGCATGAACAACGGCACTGACAGTTACGGCGTCACCACCGGCTTCGGTGCCACATCACACCGCCGAACCAAACAAGGTGGTGCTCTGCAGAAAGAACTCATCAGATTCTTAAACGCTGGAATATTTGGAAATGGAACTGAATCAAGCCATACCCTGCCACACACTGCAACCAGAGCAGCCATGTTAGTGAGAATCAACACTCTTCTTCAGGGGTACTCAGGCATTAGATTTGAAATCTTAGAAGCCATCACCAAGCTCCTGAACAACAACGTTACCCCATGTTTGCCACTTCGTGGTACAATCACAGCTTCTGGAGATCTTGTTCCACTTTCTTACATTGCTGGTTTGCTAACTGGCAGACCCAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTTAACGCAAAAGAAGCTTTTGAATTGGCTAGCATCAACTCTGAGTTCTTTGAATTGCAACCCAAGGAAGGTCTTGCCCTTGTTAATGGCACTGCTGTTGGTTCTGGATTAGCTTCTATGGTACTCTTTGAGGCTAATATACTAGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCTGAAGTGATGCAGGGGAAACCTGAATTCACTGACCATTTGACACACAAGCTAAAGCACCATCCTGGTCAAATTGAGGCTGCTGCTATTATGGAGCATATCTTGGATGGAAGTTCCTACATGAAAGCTGCTAAGAAGTTGCATGAGATTGATCCCTTGCAAAAGCCAAAACAAGATAGATATGCCCTTAGAACTTCACCACAGTGGCTTGGTCCTCTTATTGAAGTGATTCGTTTCTCAACCAAGTCAATTGAGAGAGAGATCAACTCTGTGAATGACAACCCTTTGATTGATGTTTCAAGGAACAAGGCATTGCATGGTGGCAATTTCCAAGGAACCCCTATTGGAGTCTCTATGGACAACACACGTTTGGCACTTGCATCTATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTTTTACAACAATGGATTGCCTTCAAATCTCACTGCTAGCAGAAATCCAAGCTTGGACTATGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTACTGCTCTGAACTCCAATATCTTGCAAATCCAGTAACTACCCATGTCCAAAGTGCTGAGCAACACAACCAGGATGTCAACTCTTTGGGCTTGATCTCATCTAGAAAGACAAATGAAGCCATCGAGATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTAGAGGAGAATTTGAAAAACTCGGTCAAGAACACCGTGAGCCAAGTTTCCAAAAGGATTCTTACCACAGGTGTCAATGGAGAACTCCATCCTTCAAGATTTTGTGAGAAGGATCTGCTAAAAGTGGTTGATAGGGAGTATATATTTTCCTACATTGATGACCCCTGCAGTGCTACATACCCATTGATGCAAAAACTTAGGCAAGTGCTTGTAGATCATGCATTGGTAAATGCAGAGAGTGAGAAGGATGTGAACTCGTCCATCTTTCAAAAGATAGCAATCTTTGAGGAAGAGTTGAAGAATCTCTTGCCAAAAGAGGTTGAAAGTGCAAGGGCTGCTTATGAGAGTGGCAAAGCTGCAATTCCAAACAAGATCCAAGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGAGAGGAATTAGGGACTGGGTTGCTAACTGGAGAAAAGGTGAGGTCACCAGGTGAAGAGTTTGACAAATTATTCACAGCAATGTGCCAAGGGAAAATTATTGATCCTCTTATGGAGTGCCTTGGGGAGTGGAATGGAGCTCCTCTTCCAATCTCTTAA 2151 0.4584 MEATTITNGSQNGSFCLSTTKGSSDPLNWGAAAEAMKGSHLDEVKRMVAEYRKPVVRLGGETLTIAQVAAVAGHDLGVAVELSESAREGVKASSEWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFELASINSEFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVSKRILTTGVNGELHPSRFCEKDLLKVVDREYIFSYIDDPCSATYPLMQKLRQVLVDHALVNAESEKDVNSSIFQKIAIFEEELKNLLPKEVESARAAYESGKAAIPNKIQECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLMECLGEWNGAPLPIS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01672 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Gma03g01672 716 CDD PAL-HAL 61 526 IPR001106 -
Gma03g01672 716 Gene3D - 16 262 IPR024083 -
Gma03g01672 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841
Gma03g01672 716 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 25 705 IPR005922 GO:0005737|GO:0006559|GO:0016841
Gma03g01672 716 SUPERFAMILY L-aspartase-like 25 715 IPR008948 GO:0003824
Gma03g01672 716 Pfam Aromatic amino acid lyase 63 539 IPR001106 -
Gma03g01672 716 Gene3D - 529 650 IPR023144 -
Gma03g01672 716 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 20 715 - -
Gma03g01672 716 PANTHER HISTIDINE AMMONIA-LYASE 20 715 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01672 Gma-Chr3 42833250 42836336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01672 23 715 Monolignol Biosynthesis Gene Families AT2G37040 84.416 0.0 1251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01672 K10775 - gmx:100787902 1406.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01673 03 42844985 42848878 Gma03g01672 03 42833250 42836336 ECH
Gma19g01721 19 46527255 46531217 Gma03g01672 03 42833250 42836336 ECH
Gma03g01672 03 42833250 42836336 Gma03g01672 03 42833250 42836336 ECH