Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01658 ATGCAAATGATACCCGGAGACCCCTTTTCACTATCCACTTCCCTCCCAGCAGGGCTTCCCAATGAACAAAGCACAAACACAAACCCTAATCCTAATCCTCCACCACCCAACAAAAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCCGAGGTTATTGCTCTTTCGCCAAAGACTCTCATGGCCACAAACCGTTTCATCTGTGAAATATGCAACAAAGGGTTTCAGAGAGACCAGAACCTTCAGCTTCATAGAAGAGGTCACAACCTTCCATGGAAGCTACGACAGAGATCAAACAAGGAGGTTCGGAAGAAGGTATATATCTGTCCAGAGAAAACCTGTGTCCACCACGACGCGGCAAGGGCTCTCGGTGATTTCACCGGAATAAAGAAGCATTACAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCCAAAAAATACGCAGTTCAATCTGATTGGAAGGCTCACACCAAAACCTGTGGCACCAGAGAGTATAAGTGCGACTGTGGCAACCTCTTCTCCAGGAAGGACAGTTTTATTACTCACAGGGCCTTCTGCGATGCCTTAGCTGACGAGAGTTCGAGACTCACCTCAGTTGCTTCAACAAGCCTAAATTTTAAGAACGAAGATGCAACTATGATCAACACACAAGCTAGTTTGTCGACACGTGGATTAATCACTGGCCATGGAATGCAAAATGTTTCACAATTTGGTCCACATGGGTTTCGTTTAATGAACATGGGCACAGACCAGCAAAGACCAAACTTGTCACTATGGTTGAACCAAGGAAATCACCACATTAACAATCCACTTGATGTGGCATTATCATCAAGCTCTTCTGGTTTGCCTGAGGTTGTGCACATGGCACAAGCTAATATTAATAATAATGCCTTAATTGGTTCTTCTTCAGTGTTCTCCAATTTTGGAATGCCTGCTTCTTCAAATTCATCTAATCCAAACCTAATGGGGAAAAAAGGAGATGGTGGAGCTTCAGATTTGGCATCAATGTATTCTGAGAGTCAAAACAAGAATTCAAACTCAACTTCTCCAATGTCAGCCACTGCTCTTTTGCAGAAAGCAGCACAGATGGGTTCCACCAGAAGCACCAACCCTTCAATTTTCAGTGGCAGTTTTGGAGTAATGAGCTCATCTTCCACACAAAGCACTAGTCTCAACAGCAATATTGCAAACCAAAGCTGTGACCAACTTAACCAAGCCTTTCAGAATTTTAATGCGACAAGCAGTAGTAGTGCAACTATGCTGGGAAGTTCTACTAACTTTAGCTCATTGACGCATTCATCAAACGGTTTTGACCAGTTTATGATGCAAAACAAGGTGGAACCAACTCAGTTGAAGCTCCACCATCCTGGCTCAAACTCAGTGGAACATAACTTGACAAGAGATTTTCTTGGCGTGAGTGGAAATGGAGGTGGACATGTACATCATGCATTTCTACCCCAAGAGCTGGCAAAGTTTGCTTCCTTAGGCTCATCAATGGGGTTGAATCAGTTCACTGTAGGCCATCAATGA 1545 0.4388 MQMIPGDPFSLSTSLPAGLPNEQSTNTNPNPNPPPPNKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDAARALGDFTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGNLFSRKDSFITHRAFCDALADESSRLTSVASTSLNFKNEDATMINTQASLSTRGLITGHGMQNVSQFGPHGFRLMNMGTDQQRPNLSLWLNQGNHHINNPLDVALSSSSSGLPEVVHMAQANINNNALIGSSSVFSNFGMPASSNSSNPNLMGKKGDGGASDLASMYSESQNKNSNSTSPMSATALLQKAAQMGSTRSTNPSIFSGSFGVMSSSSTQSTSLNSNIANQSCDQLNQAFQNFNATSSSSATMLGSSTNFSSLTHSSNGFDQFMMQNKVEPTQLKLHHPGSNSVEHNLTRDFLGVSGNGGGHVHHAFLPQELAKFASLGSSMGLNQFTVGHQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01658 514 MobiDBLite consensus disorder prediction 339 356 - -
Gma03g01658 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Gma03g01658 514 PANTHER ZINC FINGER PROTEIN JACKDAW 7 501 IPR033243 GO:0003700
Gma03g01658 514 MobiDBLite consensus disorder prediction 318 356 - -
Gma03g01658 514 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Gma03g01658 514 MobiDBLite consensus disorder prediction 1 50 - -
Gma03g01658 514 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Gma03g01658 514 MobiDBLite consensus disorder prediction 1 26 - -
Gma03g01658 514 Gene3D Classic Zinc Finger 120 199 - -
Gma03g01658 514 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 501 - -
Gma03g01658 514 MobiDBLite consensus disorder prediction 27 42 - -
Gma03g01658 514 SMART c2h2final6 143 163 IPR013087 -
Gma03g01658 514 SMART c2h2final6 108 138 IPR013087 -
Gma03g01658 514 SMART c2h2final6 67 89 IPR013087 -
Gma03g01658 514 Gene3D Classic Zinc Finger 45 119 - -
Gma03g01658 514 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01658 Gma-Chr3 42669611 42671862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01658 1 501 IDZ Gene Family AT5G03150 46.812 1.45e-133 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g01658 zf-C2H2_jaz 7.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01658 K25870 - gmx:100812495 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01658 03 42669611 42671862 Gma03g01658 03 42669611 42671862 ECH
Gma19g01705 19 46328716 46331199 Gma03g01658 03 42669611 42671862 GST