Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01653 ATGGGGCATAGACAGTTCCATAACACATCTTCATTGTTCGAGGGTGAGCCTGACCAGAACTGGAATCATATGCATACTGATCAACAATGTGTGCACCTTGGTAGGACTAGCACTTCAGAGAATGGTTCATTTATTTATCCTGCTGAAAATATGTCCATAGATAACATGTCTTTCCCTTCTCATTGGAATTCTTCCACAAGGTCAAATGGATATGCATCCTCTAGTAACAACATTGATGTACCTCCTCACCAGTCAGATGCATCAGGAACTTATAATGATCATTTTGTGGATTTGTCTAGTGCTGGACCATCATTGTTTATACCGTTGGAAAATTATGCACACCAACCTTCTTCCTCCAATTATGACAGACAAACATTTCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGACAAGGGCATCACAAGCGTAAGAGCCCTGGAATTCCTTCAGTCTATGAGGCAGGCAGTACTAGTAGATACTTTAATGCTGGGAGTTCAACTGATCTTCCTATATCTTCAGAATTGTGGCAGGAGAAGCCAAATATTGATTGTCAATATATTCCCTGGGATCATTATTGTACTATGACACCCACATTGAGAGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTTTGCGGAATGTGAGGAGCCGATCTACACTTGATTTGGATTCCAATCTGGCTAGGACCCATTCATCAAGTAATCATTCACACAATTCCTACCCTACTGTCCCACCAGTTGACCATTCTAGCACGGTGGATCTTTCTGGTCAGACTTCTGTTACATTGACAAGGGATTGGAGCCAAATGAACATATCTCCAGCTAATGGAAGGGTGTTATTATCAGATACAGGTGCTTTTGGTCTTGAAACAAGTCACTTCCTTGTTGGAAGTGGTGCTACTGCTAGCAATGCTGCTTCTGTAGATGTTGGGGGATTCCATCATGAATTTGGTACAAGCAGAAATCCTACTGCTCCTCAAAGTTTTCATAATACTCAAACTCAGACTGCTAGGGGAATTAGAAGCAACTATTCTCAGAGATCCACACCAACTTTTAGGGCTTCTTCAAGCTTGCGCTTGGGACAAGTGACATCTGATGATGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACTTCCAAGGCCATTGAGCACCATTGGCAGGAGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCTAGTGAAAGATATCGATCATTGGCTGAGAGTGGTCTGCATGATCGTTTTTCCTCTGAGGGTTTCATGGTTGTTGAGCGTGCATCAGTGTATGGTTCCAGGAACATGCTAGATCAGCATCGAGACATGAGGATGGACGTAGATAACATGAGTTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGCTATGTGAACACAGGAATCTCTGAGGATTCGCTTAACAAATGTTTGACGGAAACAATATATTGTTCATCTGAGCAAAGTCAAGACGAAGGAAACTGCGTAATATGTCTGGAAGAGTACAAGAacatggacgatgttggaacacttaaaacatgtgggcatgacTACCATGTGAGCTGCATTAAAAAATGGTTATCTTTGAGGAAATTATGTCCTATCTGCAAAGTATCTGCTTTGCCTGAGGATACGAAGGATAAATAA 1656 0.4082 MGHRQFHNTSSLFEGEPDQNWNHMHTDQQCVHLGRTSTSENGSFIYPAENMSIDNMSFPSHWNSSTRSNGYASSSNNIDVPPHQSDASGTYNDHFVDLSSAGPSLFIPLENYAHQPSSSNYDRQTFHVDGGFIDLTMGSGQGHHKRKSPGIPSVYEAGSTSRYFNAGSSTDLPISSELWQEKPNIDCQYIPWDHYCTMTPTLRGTGLSIKGEGSLRNVRSRSTLDLDSNLARTHSSSNHSHNSYPTVPPVDHSSTVDLSGQTSVTLTRDWSQMNISPANGRVLLSDTGAFGLETSHFLVGSGATASNAASVDVGGFHHEFGTSRNPTAPQSFHNTQTQTARGIRSNYSQRSTPTFRASSSLRLGQVTSDDGLPMVAESYSSRLPRPLSTIGRRNGDRNGRSRISSERYRSLAESGLHDRFSSEGFMVVERASVYGSRNMLDQHRDMRMDVDNMSYEELLALGERIGYVNTGISEDSLNKCLTETIYCSSEQSQDEGNCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSLRKLCPICKVSALPEDTKDK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01653 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 544 IPR013083 -
Gma03g01653 551 SUPERFAMILY RING/U-box 488 543 - -
Gma03g01653 551 MobiDBLite consensus disorder prediction 231 257 - -
Gma03g01653 551 ProSiteProfiles Zinc finger RING-type profile. 498 540 IPR001841 -
Gma03g01653 551 MobiDBLite consensus disorder prediction 1 21 - -
Gma03g01653 551 SMART ring_2 498 539 IPR001841 -
Gma03g01653 551 Pfam Ring finger domain 497 540 IPR001841 -
Gma03g01653 551 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 547 - -
Gma03g01653 551 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 547 IPR045191 GO:0061630
Gma03g01653 551 MobiDBLite consensus disorder prediction 64 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01653 Gma-Chr3 42631859 42634545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01653 1 550 C3H Transcription Factor Family AT2G37150 42.254 2.31e-117 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01653 - - gmx:100780416 1117.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01653 03 42631859 42634545 Gma03g01653 03 42631859 42634545 ECH
Gma19g01702 19 46287062 46296098 Gma03g01653 03 42631859 42634545 GST