Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01643 ATGGGGAGGAAGGGGAATTGGTTTTCCAGTGTGAAGAAAGCTCTCAGTCCTGACTCAAAGGAGAAGAAAGAACAGAAATCAAGTAAATCTAAGAAGAAATGGTTTGGGAAGCAAAAATTGGAGACTTCAGTCTCATACTCAGAAGCTCATAAAGCACCACCACCACCGCGACCTATTCCTCCACCAGAAGCGATTAAATTAACTGATATTGAAAATGAAATCAGTCATGATCACGACTATGTTGTTGAAGTTGCAACTGCCATGGATGCCGAGGAACCTGTTCCTGCTGTTCAGATAGAACCTGTTAGGGTTGAAGCTGCCCCAATTGCTCATTATGCTGGTAAACCAAAGGATGAAGTGGCAGCTATCAAAATTCAAACAGCTTTTCGTGGATACTTGGCAAGAAGAGCATTGCGGGCTTTAAGGGGGCTGGTCAGGTTGAAATTATTGATGGAAGGGCCAGTTGTTAAACGCCAAGCCACAAGTACCCTCCACTCTATGCAGACATTATCTCGCTTGCAGTCTCAGATTCGTTCAAGGAGGATCAGAATGTTAGAGGAGAATCAGGCTCTGCAGAGACAGCTCTTACAGAAGCATGCAAGAGAGCTTGAGAGCTTGCGGATGGGAGAGGAATGGGATGACAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTTAGCAAGTATGAAGCTACTACGAGAAGAGAAAGAGCGCTGGCTTATGCATTCACTCATCAGCAAAATTGGAAGAACTCATCTAGATCTGTAAATCCAATGTTCATGGATCCAACCAATCCAAGCTGGGGTTGGAGCTGGTTGGAACGATGGATGGCAGCCCGACCTTGGGAGAGCCGTAGCCATATGGATAAAGAGTTGAATGACCACTCATCCGTAAGAAGCTCAAGCCGCAGTATTACCGGTGGAGAAATCAGCAAGTCATTTGCTCGTTTCCAGCTCAATTTGGAAAAGCACTCTCCAACAGCCTGCCAGAATCCTGGCTCACCTAGCTTTCAGTCCACTCCTTCCAAGCCAGCTTCAATATCTGCTAAGAAACCAAAGAAGGTAAGTCCAAGCCCAAGGGGCAGCTGGGTTACAGACGAGGACTCCAAAAGCTTGGTCAGTGTACAGTCAGACCGGTTCCGGAGGCACTCCATTGCCGGTTCATTGGTGAGAGATGATGAGAGCCTTGCTAGCTCTCCAGCAGTTCCAAGCTACATGGTGCCAACTCAATCTGCAAAAGCCAAGTCCAGGACACAAAGTCCATTAGCCCCAGAAAATGGAAAAGCAGAGAAAGGTTCCTTTGGGAGTGCGAAGAAGCGGCTTTCTTTCCCAGCTTCACCTGCCAGGCCAAGGCGCCATTCAGGTCCACCAAAGGTAGAAAGCAGCAGCTTAAATGCAGAGTTAGCTGTGGACAAGGGTGTGGACAGTTGA 1434 0.4728 MGRKGNWFSSVKKALSPDSKEKKEQKSSKSKKKWFGKQKLETSVSYSEAHKAPPPPRPIPPPEAIKLTDIENEISHDHDYVVEVATAMDAEEPVPAVQIEPVRVEAAPIAHYAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKLLMEGPVVKRQATSTLHSMQTLSRLQSQIRSRRIRMLEENQALQRQLLQKHARELESLRMGEEWDDSLQSKEQIEAKLLSKYEATTRRERALAYAFTHQQNWKNSSRSVNPMFMDPTNPSWGWSWLERWMAARPWESRSHMDKELNDHSSVRSSSRSITGGEISKSFARFQLNLEKHSPTACQNPGSPSFQSTPSKPASISAKKPKKVSPSPRGSWVTDEDSKSLVSVQSDRFRRHSIAGSLVRDDESLASSPAVPSYMVPTQSAKAKSRTQSPLAPENGKAEKGSFGSAKKRLSFPASPARPRRHSGPPKVESSSLNAELAVDKGVDS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01643 477 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Gma03g01643 477 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
Gma03g01643 477 MobiDBLite consensus disorder prediction 1 62 - -
Gma03g01643 477 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 472 - -
Gma03g01643 477 SMART iq_5 117 139 IPR000048 GO:0005515
Gma03g01643 477 PANTHER IQ-DOMAIN 5-RELATED 1 472 - -
Gma03g01643 477 MobiDBLite consensus disorder prediction 403 424 - -
Gma03g01643 477 MobiDBLite consensus disorder prediction 326 347 - -
Gma03g01643 477 MobiDBLite consensus disorder prediction 394 477 - -
Gma03g01643 477 MobiDBLite consensus disorder prediction 326 373 - -
Gma03g01643 477 Pfam Protein of unknown function (DUF4005) 391 453 IPR025064 -
Gma03g01643 477 Gene3D - 102 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01643 Gma-Chr3 42556360 42560577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01643 1 465 IQD Protein Family AT5G03040 53.488 6.64e-147 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01643 - - gmx:100777223 848.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01643 03 42556360 42560577 Gma03g01643 03 42556360 42560577 ECH
Gma19g01691 19 46215767 46220300 Gma03g01643 03 42556360 42560577 GST
Gma03g01643 03 42556360 42560577 Gma10g00466 10 4541571 4545428 PCT
Gma03g01643 03 42556360 42560577 Gma13g01176 13 25950346 25953573 PCT
Gma10g00466 10 4541571 4545428 Gma03g01643 03 42556360 42560577 PCT
Gma13g01176 13 25950346 25953573 Gma03g01643 03 42556360 42560577 PCT