Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01636 ATGGCAGTAGCAGCAGCTCGCCCTATCGTCTCCGTCCAAACCCTAGAGGGCGATGCAACCCCCACCGTTCCTCTTCCCGACGTCATGAAAGCCTCCATTCGGCCTGACATCGTCAATTTCGTCCACTCCAACATTTCTCGCAACAGCCGCCAACCCTACGCCGTCAGCAAGCGCGCCGGCCACCAAACCTCCGCCGAGTCCTGGGGCACCGGCCGCGCCGTCTCGCGTATCCCGCGAGTCCCCGGCGGTGGTACCCACCGCGCCGGCCAGGGCGCCTTCGGAAACATGTGCCGTGGCGGCCGCATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTTCAACAGAAGCGCCACGCCGTCGTCTCCGCCATCGCCGCCTCCGCAATCCCCTCGCTCGTCCAGGCTCGCGGCCACCGCATCGAGTCCGTCCCGGAACTCCCCCTCGTCGTCAGCGACACCGTCGAAAGCGTCGAGAAATCCAAAGAAGCCGTCAAAATTCTCCAGAAAATCGGCGCATTCACAGACGCGGAGAAAGCTAAACTCAGTCACGGAATTCGTCCCGGGAAGGGAAAAATGAGGAACCGCAGGTATATCTCTGGCAAGGGTCCTCTCATAGTGTACGGAACAGAAGGTGCTAAGGCCATTAAAGCCTTCAGGAACATTCCCGGTGTAGAGGTGGCAAACGTTGATAGGCTCAACCTTCTGAAGCTGGCACCCGGTGGCCACCTTGGAAGGTTCATTATTTGGACCAAGTCCGCATTTGAGAAATTGGACTCTATCTATGGATCCTTCGATAAGACCTCCGAGAAGAAAAAGGGCTACTTGCTTCCCAGGCCCAAGATGATCAACTCTGACTTGGCCCGTATCATTAACTCCGACGAGGTCCAGTCCGTGGTCAGGCCCATTAAGAAAGATGTTAAGAGAGCACCTCTCAAGAAGAACCCTCTCACGAACCTCAATGCGATGTTGAAGCTCAATCCCTATGCTAAGACCGCTAAGAGAATGGCTCTTCTCGCTGAGAAGCAGCGCATTGTGGCTAAGAAGGAGAAGCTTCATAAGAAGCGCAACATTGTCTCCAAGGAGGAGGCTTCTGCTATCAAAGCTGCTGGAAAATCATGGTATCAAACTATGGTGTCCGACTCTGATTATGCAGAATTTGACAACTTTTCTAAGTGGCTGGGTGTTTCCCAGTAA 1209 0.5542 MAVAAARPIVSVQTLEGDATPTVPLPDVMKASIRPDIVNFVHSNISRNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVQQKRHAVVSAIAASAIPSLVQARGHRIESVPELPLVVSDTVESVEKSKEAVKILQKIGAFTDAEKAKLSHGIRPGKGKMRNRRYISGKGPLIVYGTEGAKAIKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKTSEKKKGYLLPRPKMINSDLARIINSDEVQSVVRPIKKDVKRAPLKKNPLTNLNAMLKLNPYAKTAKRMALLAEKQRIVAKKEKLHKKRNIVSKEEASAIKAAGKSWYQTMVSDSDYAEFDNFSKWLGVSQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01636 402 PANTHER 60S RIBOSOMAL PROTEIN L4 3 402 IPR045240 -
Gma03g01636 402 SUPERFAMILY Ribosomal protein L4 9 264 IPR023574 GO:0003735|GO:0005840|GO:0006412
Gma03g01636 402 PANTHER BNAC03G35890D PROTEIN 3 402 - -
Gma03g01636 402 Pfam 60S ribosomal protein L4 C-terminal domain 277 348 IPR025755 -
Gma03g01636 402 Pfam Ribosomal protein L4/L1 family 23 263 IPR002136 GO:0003735|GO:0005840|GO:0006412
Gma03g01636 402 Gene3D - 4 305 IPR023574 GO:0003735|GO:0005840|GO:0006412
Gma03g01636 402 MobiDBLite consensus disorder prediction 52 70 - -
Gma03g01636 402 MobiDBLite consensus disorder prediction 52 93 - -
Gma03g01636 402 ProSitePatterns Ribosomal protein L1e signature. 117 143 IPR013000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01636 Gma-Chr3 42475992 42477440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01636 1 402 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 78.818 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01636 K02930 - gmx:100796712 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01683 19 46124864 46126573 Gma03g01636 03 42475992 42477440 GST
Gma03g01636 03 42475992 42477440 Gma10g00456 10 4415389 4418362 PCT
Gma03g01636 03 42475992 42477440 Gma13g01165 13 25825626 25828139 PCT
Gma10g00456 10 4415389 4418362 Gma03g01636 03 42475992 42477440 PCT
Gma13g01165 13 25825626 25828139 Gma03g01636 03 42475992 42477440 PCT