LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma03g01636	ATGGCAGTAGCAGCAGCTCGCCCTATCGTCTCCGTCCAAACCCTAGAGGGCGATGCAACCCCCACCGTTCCTCTTCCCGACGTCATGAAAGCCTCCATTCGGCCTGACATCGTCAATTTCGTCCACTCCAACATTTCTCGCAACAGCCGCCAACCCTACGCCGTCAGCAAGCGCGCCGGCCACCAAACCTCCGCCGAGTCCTGGGGCACCGGCCGCGCCGTCTCGCGTATCCCGCGAGTCCCCGGCGGTGGTACCCACCGCGCCGGCCAGGGCGCCTTCGGAAACATGTGCCGTGGCGGCCGCATGTTCGCTCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATCAACGTTCAACAGAAGCGCCACGCCGTCGTCTCCGCCATCGCCGCCTCCGCAATCCCCTCGCTCGTCCAGGCTCGCGGCCACCGCATCGAGTCCGTCCCGGAACTCCCCCTCGTCGTCAGCGACACCGTCGAAAGCGTCGAGAAATCCAAAGAAGCCGTCAAAATTCTCCAGAAAATCGGCGCATTCACAGACGCGGAGAAAGCTAAACTCAGTCACGGAATTCGTCCCGGGAAGGGAAAAATGAGGAACCGCAGGTATATCTCTGGCAAGGGTCCTCTCATAGTGTACGGAACAGAAGGTGCTAAGGCCATTAAAGCCTTCAGGAACATTCCCGGTGTAGAGGTGGCAAACGTTGATAGGCTCAACCTTCTGAAGCTGGCACCCGGTGGCCACCTTGGAAGGTTCATTATTTGGACCAAGTCCGCATTTGAGAAATTGGACTCTATCTATGGATCCTTCGATAAGACCTCCGAGAAGAAAAAGGGCTACTTGCTTCCCAGGCCCAAGATGATCAACTCTGACTTGGCCCGTATCATTAACTCCGACGAGGTCCAGTCCGTGGTCAGGCCCATTAAGAAAGATGTTAAGAGAGCACCTCTCAAGAAGAACCCTCTCACGAACCTCAATGCGATGTTGAAGCTCAATCCCTATGCTAAGACCGCTAAGAGAATGGCTCTTCTCGCTGAGAAGCAGCGCATTGTGGCTAAGAAGGAGAAGCTTCATAAGAAGCGCAACATTGTCTCCAAGGAGGAGGCTTCTGCTATCAAAGCTGCTGGAAAATCATGGTATCAAACTATGGTGTCCGACTCTGATTATGCAGAATTTGACAACTTTTCTAAGTGGCTGGGTGTTTCCCAGTAA	1209	0.5542	MAVAAARPIVSVQTLEGDATPTVPLPDVMKASIRPDIVNFVHSNISRNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVQQKRHAVVSAIAASAIPSLVQARGHRIESVPELPLVVSDTVESVEKSKEAVKILQKIGAFTDAEKAKLSHGIRPGKGKMRNRRYISGKGPLIVYGTEGAKAIKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKTSEKKKGYLLPRPKMINSDLARIINSDEVQSVVRPIKKDVKRAPLKKNPLTNLNAMLKLNPYAKTAKRMALLAEKQRIVAKKEKLHKKRNIVSKEEASAIKAAGKSWYQTMVSDSDYAEFDNFSKWLGVSQ	402

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma03g01636	402	PANTHER	60S RIBOSOMAL PROTEIN L4	3	402	IPR045240	-
Gma03g01636	402	SUPERFAMILY	Ribosomal protein L4	9	264	IPR023574	GO:0003735\|GO:0005840\|GO:0006412
Gma03g01636	402	PANTHER	BNAC03G35890D PROTEIN	3	402	-	-
Gma03g01636	402	Pfam	60S ribosomal protein L4 C-terminal domain	277	348	IPR025755	-
Gma03g01636	402	Pfam	Ribosomal protein L4/L1 family	23	263	IPR002136	GO:0003735\|GO:0005840\|GO:0006412
Gma03g01636	402	Gene3D	-	4	305	IPR023574	GO:0003735\|GO:0005840\|GO:0006412
Gma03g01636	402	MobiDBLite	consensus disorder prediction	52	70	-	-
Gma03g01636	402	MobiDBLite	consensus disorder prediction	52	93	-	-
Gma03g01636	402	ProSitePatterns	Ribosomal protein L1e signature.	117	143	IPR013000	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma03g01636	Gma-Chr3	42475992	42477440	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma03g01636	1	402	Cytoplasmic Ribosomal Protein Gene Family	AT3G09630	78.818	0.0	657

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma03g01636	K02930		-	gmx:100796712	760.755

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gma19g01683	19	46124864	46126573	Gma03g01636	03	42475992	42477440	GST
Gma03g01636	03	42475992	42477440	Gma10g00456	10	4415389	4418362	PCT
Gma03g01636	03	42475992	42477440	Gma13g01165	13	25825626	25828139	PCT
Gma10g00456	10	4415389	4418362	Gma03g01636	03	42475992	42477440	PCT
Gma13g01165	13	25825626	25828139	Gma03g01636	03	42475992	42477440	PCT

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