Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01628 ATGGGTTGGATTCCCTGTTCTGGATATTCTGGCACTAAGAACAAGGTTGAGAAGATGGAAGTTCAGGATAGTCTCGTTGGTCAGATCAAAGCCACCCCAGGAAAGTTGAAAAGGAATTCATCCACGAAATCCAAAGATACATCTAAAAATGGGAACCCTGATCACATTGCAGCACAGACATTTGCGTTCCGTGAGTTGGCAACTGCAACTAGAAATTTTAGAAATGATTGTCTTTTGGGAGAGGGAGGCTTTGGTAGAGTATACAAAGGGCGTTTGGAAAGTATTAATCAGGTTGTTGCGATTAAGCAACTTGACCGAAATGGACTGCAAGGGAATAGGGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCACCATTCTAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATGCTTGGAAGACCACTTGCATGACATTCCTCCTGGCAAGAAACGACTTGACTGGAACACGCggatgaaaatagctgctggggcagcaaagggattggaatatctacatgacaaagctaatcctcctgtcatataccgagacttaaagtgctccaacattttgcttggtgaagggtatcatccaaagttatctgattttggtttggctaaacttggtccagttggggaaaacacccatgtatcaacaagggttatgggcacctatggatattgtgctccagagtatgcaatgactggtcaactgactctgaaatcagatgtttatagctttggagtagttcttctggaaataattaccggaaggaaggcaattgacaattcaaaatctgcaggagagcagaatcttgttgcatggGCTAGACCCTTGTTTAAAGATCGAAGAAAGTTTTCACAAATGGCCGATCCAACACTCCACGGTCAATATCCTCCAAGAGGGCTATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAACAGGCTAACTTGCGTCCAGTCATAGCCGATGTTGTCACAGCACTGTCTTACCTTGCTTCACAAAAATATGACCCCAATACACACACAGTCCAAAGCTCTCGCCATGCTCCCAGTACTCCTCCTAGAACCAGGAGGGGGATATGA 1140 0.3061 MGWIPCSGYSGTKNKVEKMEVQDSLVGQIKATPGKLKRNSSTKSKDTSKNGNPDHIAAQTFAFRELATATRNFRNDCLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHSNLVNLIGYCADGDQRLLVYEYMPLGCLEDHLHDIPPGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFKDRRKFSQMADPTLHGQYPPRGLYQALAVAAMCVQEQANLRPVIADVVTALSYLASQKYDPNTHTVQSSRHAPSTPPRTRRGI 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01628 379 SUPERFAMILY Protein kinase-like (PK-like) 56 347 IPR011009 -
Gma03g01628 379 Gene3D Phosphorylase Kinase; domain 1 42 149 - -
Gma03g01628 379 MobiDBLite consensus disorder prediction 32 54 - -
Gma03g01628 379 Pfam Protein tyrosine and serine/threonine kinase 78 281 IPR001245 GO:0004672|GO:0006468
Gma03g01628 379 CDD STKc_IRAK 79 347 - -
Gma03g01628 379 Gene3D Transferase(Phosphotransferase) domain 1 150 369 - -
Gma03g01628 379 MobiDBLite consensus disorder prediction 358 379 - -
Gma03g01628 379 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 377 - -
Gma03g01628 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Gma03g01628 379 PANTHER OS07G0668900 PROTEIN 1 377 - -
Gma03g01628 379 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Gma03g01628 379 SMART serkin_6 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01628 379 ProSiteProfiles Protein kinase domain profile. 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01628 Gma-Chr3 42429123 42432319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01628 39 352 Glycoside Hydrolase AT3G07070 68.790 2.24e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Gma03g01628 PK_Tyr_Ser-Thr 8.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01628 - - gmx:100818024 761.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01675 19 46064901 46068047 Gma03g01628 03 42429123 42432319 GST
Gma03g01628 03 42429123 42432319 Gma10g00451 10 4343853 4347483 PCT
Gma03g01628 03 42429123 42432319 Gma13g01157 13 25738506 25742398 PCT
Gma10g00451 10 4343853 4347483 Gma03g01628 03 42429123 42432319 PCT
Gma13g01157 13 25738506 25742398 Gma03g01628 03 42429123 42432319 PCT