Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01598 ATGAACAACAACATGTTAGGAATGAAGAGACGGAGAGATGATAATGAAGGGTCCTTGGATTTGGCAAAATGTCTTATGCTGTTTTCTTGTCCAATAGAAAGCAACAAGACACAACAGAAAAGTTTTGGTTCTGTGGAATTTGAGTGCAAGACGTGCAACCGCAAGTTCTCTTCTTTTCAAGCACTGGGAGGGCACAGGGCAAGCCACAAGAGGCAGAAGCTGGAGGGGGAAGAACTGAAAGAACAGGCCAAAAGTCTTAGCTTGTGGAACAAACCCAAAATGCACGAGTGCTCCATTTGTGGCCTTGAATTCTCTCTGGGCCAGGCTCTGGGTGGCCACATGAGAAAACACAGAGCTTCCCTCAACGAAGGGTTTCCTATTATTCCTTCTATCGACCAAGTTATTGCGAAAATCCCGGTTTTGAAAAGGTCGAATAGCACCAGGGTTATGTGCTTGGACTTGGAGTTACACCTGTAG 477 0.457 MNNNMLGMKRRRDDNEGSLDLAKCLMLFSCPIESNKTQQKSFGSVEFECKTCNRKFSSFQALGGHRASHKRQKLEGEELKEQAKSLSLWNKPKMHECSICGLEFSLGQALGGHMRKHRASLNEGFPIIPSIDQVIAKIPVLKRSNSTRVMCLDLELHL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01598 158 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Gma03g01598 158 SMART c2h2final6 47 69 IPR013087 -
Gma03g01598 158 SMART c2h2final6 95 117 IPR013087 -
Gma03g01598 158 SUPERFAMILY beta-beta-alpha zinc fingers 47 117 IPR036236 -
Gma03g01598 158 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Gma03g01598 158 Gene3D Classic Zinc Finger 44 117 - -
Gma03g01598 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Gma03g01598 158 Pfam C2H2-type zinc finger 95 119 - -
Gma03g01598 158 Pfam C2H2-type zinc finger 47 72 - -
Gma03g01598 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Gma03g01598 158 PANTHER ZINC FINGER PROTEIN ZAT5 8 158 - -
Gma03g01598 158 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 8 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01598 Gma-Chr3 42222034 42222860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01598 8 156 C2H2 Transcription Factor Family AT2G37430 48.148 1.59e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g01598 zf-C2H2_6 7.9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01598 - - gmx:100526897 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01645 19 45854282 45854971 Gma03g01598 03 42222034 42222860 GST
Gma03g01598 03 42222034 42222860 Gma10g00424 10 4073948 4074786 PCT
Gma03g01598 03 42222034 42222860 Gma13g01131 13 25450472 25451053 PCT
Gma10g00424 10 4073948 4074786 Gma03g01598 03 42222034 42222860 PCT
Gma13g01131 13 25450472 25451053 Gma03g01598 03 42222034 42222860 PCT