Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma03g01597 | ATGGAAGTGTGCAAGAAAATGTTCTCTGAATTAGCAGGAGATATCAATGTCCAAAAAAGTCCAACCCAAGAAGCATTCGAGTGCAAGACCTGCAACCGCAAATTCTCGTCGTTTCAAGCGTTGGGTGGTCACAGGGCTAGCCACAAGAGGCCTAAACTTGAGGATTCTTCTGTGGGTAAACCCAAAATACACGAGTGCTCAATTTGTGGCCTGGGATTCTCTCTGGGTCAGGCACTGGGAGGCCACATGAGAAAACACACAGAATCCATCAATGGAAATGAAAGCTTTTCATTTTCTTCTATAAACCAGGTTGTTGTTGCATCCAGCAGTAGTAGTAGTAGTGCAAGGACAATGTGCTTGGACCTCAACTTAACGCCTTTGGAGAATGACTTGAAGTTCTTGTTCGAGATCACAACCCCACCTAAACTTAATATTTCTTTGTGA | 444 | 0.4392 | MEVCKKMFSELAGDINVQKSPTQEAFECKTCNRKFSSFQALGGHRASHKRPKLEDSSVGKPKIHECSICGLGFSLGQALGGHMRKHTESINGNESFSFSSINQVVVASSSSSSSARTMCLDLNLTPLENDLKFLFEITTPPKLNISL | 147 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma03g01597 | 147 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 19 | 133 | - | - | |
| Gma03g01597 | 147 | SMART | c2h2final6 | 64 | 86 | IPR013087 | - | |
| Gma03g01597 | 147 | SMART | c2h2final6 | 26 | 48 | IPR013087 | - | |
| Gma03g01597 | 147 | Gene3D | Classic Zinc Finger | 22 | 50 | - | - | |
| Gma03g01597 | 147 | Pfam | C2H2-type zinc finger | 64 | 86 | - | - | |
| Gma03g01597 | 147 | Pfam | C2H2-type zinc finger | 25 | 51 | - | - | |
| Gma03g01597 | 147 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 66 | 86 | IPR013087 | - | |
| Gma03g01597 | 147 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 28 | 48 | IPR013087 | - | |
| Gma03g01597 | 147 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 64 | 87 | IPR013087 | - | |
| Gma03g01597 | 147 | Gene3D | Classic Zinc Finger | 52 | 116 | - | - | |
| Gma03g01597 | 147 | PANTHER | AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED | 19 | 133 | - | - | |
| Gma03g01597 | 147 | SUPERFAMILY | beta-beta-alpha zinc fingers | 25 | 86 | IPR036236 | - | |
| Gma03g01597 | 147 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 26 | 53 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma03g01597 | Gma-Chr3 | 42219952 | 42220395 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma03g01597 | 19 | 147 | C2H2 Transcription Factor Family | AT2G37430 | 50.000 | 6.67e-37 | 123 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Gma03g01597 | zf-C2H2_6 | 2.4e-08 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma03g01597 | - | - | gmx:100800759 | 270.011 |