Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01596 ATGAAGAGACAGAGAGATTTCGAGGGGTTTGAGAGCATAGATTTGGCAAATTGTCTAATGATGCTCTCTCATCCCCAACAAAATAAGAAACTACTTCAAACAAAAATTGAGGCTGTGAAATTTGAGTGCAAGACATGCAACCGCAAATTCTCTTCCTTTCAAGCATTGGGTGGCCATAGGGCTAGCCACAAAAGGTCGAAACTTGAGGGAGATGAACTCAAAGCACATGCTATATCTCTAAGTTTGGGAAACAAACCCAAAATGCACGAGTGTTCCATTTGTGGACAAGAATTCTCATTGGGACAAGCACTTGGGGGTCACATGAGAAGGCACAGGACAACCATTAACGAAGATTTTTCTTCAATAAAACAGGTTATTACACAAGTACCTGATTTGAAAAGATCGAATAGCACGAGGGTGATTATGTGCTTGGACTTGAACCTAACGCCGTTTGAGAACGACTTGAAGTTGTTGTTTGGAAAGATGGCACCGAATTCTGGTGCCTTAGTTGATTCTTTATAG 522 0.4119 MKRQRDFEGFESIDLANCLMMLSHPQQNKKLLQTKIEAVKFECKTCNRKFSSFQALGGHRASHKRSKLEGDELKAHAISLSLGNKPKMHECSICGQEFSLGQALGGHMRRHRTTINEDFSSIKQVITQVPDLKRSNSTRVIMCLDLNLTPFENDLKLLFGKMAPNSGALVDSL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01596 173 Pfam C2H2-type zinc finger 89 113 - -
Gma03g01596 173 Pfam C2H2-type zinc finger 41 65 - -
Gma03g01596 173 SUPERFAMILY beta-beta-alpha zinc fingers 41 111 IPR036236 -
Gma03g01596 173 PANTHER ZINC FINGER PROTEIN ZAT5 11 165 - -
Gma03g01596 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Gma03g01596 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Gma03g01596 173 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Gma03g01596 173 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 11 165 - -
Gma03g01596 173 Gene3D Classic Zinc Finger 38 111 - -
Gma03g01596 173 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Gma03g01596 173 SMART c2h2final6 89 111 IPR013087 -
Gma03g01596 173 SMART c2h2final6 41 63 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01596 Gma-Chr3 42216731 42217252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01596 1 161 C2H2 Transcription Factor Family AT2G37430 51.190 3.91e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g01596 zf-C2H2_6 1.5e-09 CL0361