Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01588 ATGGCTTTTTTGTATGGAGCTCAGCGTCTGCTTCGCCACACCCCACTTGTTCATTCCCACTATGCTTCCATTCGTCTCAGCTCAACTCTCACTTCCCCCAAACTTTTCGTCAGCGGTCTTTCTAGACTGACAAAAGATGAAAACCTTAAGGATGCATTTTCTTCTTTTGGGCAGCTGGTTGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCAAAGGGATTCGCTTTTGTAACTTATACAACCATAGAAGAAGCTGAAAGGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAGCCAAGAGAGCCTAGACCTCCTCAGCAATCACAGTCTCAGCCCTCCGAAATAGGTTTCACTGTCAACAAAACGGTTGGCTGGTGTGGTTGA 420 0.4476 MAFLYGAQRLLRHTPLVHSHYASIRLSSTLTSPKLFVSGLSRLTKDENLKDAFSSFGQLVEAKVITDRASGRSKGFAFVTYTTIEEAERAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSEIGFTVNKTVGWCG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01588 139 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 139 - -
Gma03g01588 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
Gma03g01588 139 PANTHER NUCLEOLAR PROTEIN 8 1 139 - -
Gma03g01588 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Gma03g01588 139 SUPERFAMILY RNA-binding domain, RBD 31 125 IPR035979 GO:0003676
Gma03g01588 139 Gene3D - 21 123 IPR012677 -
Gma03g01588 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01588 Gma-Chr3 42138369 42140565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01588 35 126 Eukaryotic Initiation Factors Gene Family AT3G16380 36.842 4.40e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01588 - - gmx:100804327 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01588 03 42138369 42140565 Gma03g01588 03 42138369 42140565 ECH
Gma19g01637 19 45764323 45767080 Gma03g01588 03 42138369 42140565 GST