LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma03g01583	ATGGCGGCGTCGCGGCGTCTCCGGGACCTCCAATCCCAACCGGCGAACAAGATCTGCGTGGACTGTTCCCAGAAGAACCCGCAATGGGCCTCCGTATCGTACGGCGTCTTCATGTGCCTAGAGTGCTCAGGCAAGCACCGCGGCCTGGGCGTGCACATCTCCTTCGTGCGATCCGTGACGATGGATTCGTGGTCCGAAATCCAGATCAAGAAAATGGAAGCCGGAGGCAACGACAAACTCAACGCCTTCCTCACGCAATACGGCATCCCCAAGGAAACCGACATCGTCGCCAAGTACAACTCCAATGCCGCAGCCGTCTACCGCGACCGCATCCAGGCCCTCGCCGACGGCCGTCCCTGGCGGGATCCCCCAGTCGTCAAGGAAGCCGTCCGCTCCTCCGCATCAAAGGGCAAGCCGCCGCTCTCGGCTGGCAACAACAACAACGGCGGATGGGATAATTGGGACCCGGACGACGGATTCGGATCGGCCAGGGGCGGGGCGGATCTCAGGAGGAACCAGTCCACCGGCGATGTGAGGGGATTCGGAGGCGGCGGGAACGTGTCGAGGTCGAAATCGACTCAGGATATGTACACGCGGGCTGAATTGGAAGCCTCTGCTGCCAACAAAGAAGACTTCTTCGCGCGGAAGAGGGCGGAGAATGAGTCAAGGCCGGAGGGGCTTCCGCCGTCGCAGGGTGGCAAGTATGTTGGATTCGGATCTGGCCCCGCCCCGAACCAGACGGGGGTTAATCAGCAAAACGATTATCTTTCTGTCGTTTCTCAGGGATTTGGTAAATTATCATTGGCTGCTGCTAATGTTGTTCAGGCCGGGACAAAAGAATTCTCTGCTAAGGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATTGGACAAAGGACTTGGGGTATAATGAAAGGGGTCATGGCATTGGCTTCACAGAAGGTTGAGGAATTCGCTAGAGATAACCCGAATTGGATGTCTGATAACTGGCAACGAAATGAAAGTGATAGAAATGGTTTCTACCAGGAGTTCAATCGAGAGAATAATGGCCGAAATTCTTCTACCAGAGAAGGACAACATTCTTCAGGTGGGCAAACTAATACTTTTCACTCAAGCTCTTGGGATGATTGGGGCCACAATGATTCTAGGAAGGAAGAAACAGCTAAAGGATCAGCTCCTCAGTCATCAGGTGGGAAGTTTGATAATAATTATAACTCAAGCTCTTGGGATGATTGGGACCAGGAAGATACAAGGAAGAAAGAACCAGCTAAAGGGTCAGCTGCCCATAGCAGTGATGGTTGGGCTGGATGGGATAATGCCAAAGATGATGGATTTGATGATATCTATGGGAGTGCATCTAATAATAAAGGTGGCGCTCATAATGACAAGTCAGGTGCTGCCTGGACAGGAGGAGGCTTTCTCTAA	1461	0.5264	MAASRRLRDLQSQPANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLTQYGIPKETDIVAKYNSNAAAVYRDRIQALADGRPWRDPPVVKEAVRSSASKGKPPLSAGNNNNGGWDNWDPDDGFGSARGGADLRRNQSTGDVRGFGGGGNVSRSKSTQDMYTRAELEASAANKEDFFARKRAENESRPEGLPPSQGGKYVGFGSGPAPNQTGVNQQNDYLSVVSQGFGKLSLAAANVVQAGTKEFSAKVKEGGYDYKVNETVNVVSQKTSEIGQRTWGIMKGVMALASQKVEEFARDNPNWMSDNWQRNESDRNGFYQEFNRENNGRNSSTREGQHSSGGQTNTFHSSSWDDWGHNDSRKEETAKGSAPQSSGGKFDNNYNSSSWDDWDQEDTRKKEPAKGSAAHSSDGWAGWDNAKDDGFDDIYGSASNNKGGAHNDKSGAAWTGGGFL	486

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma03g01583	486	MobiDBLite	consensus disorder prediction	355	387	-	-
	Gma03g01583	486	CDD	ArfGap_ArfGap1	3	117	-	-
	Gma03g01583	486	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	406	486	IPR044519	GO:0005096\|GO:0016192
	Gma03g01583	486	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	1	408	IPR044519	GO:0005096\|GO:0016192
	Gma03g01583	486	MobiDBLite	consensus disorder prediction	423	438	-	-
	Gma03g01583	486	MobiDBLite	consensus disorder prediction	401	422	-	-
	Gma03g01583	486	MobiDBLite	consensus disorder prediction	117	196	-	-
	Gma03g01583	486	PRINTS	HIV Rev interacting protein signature	16	35	IPR001164	GO:0005096
	Gma03g01583	486	PRINTS	HIV Rev interacting protein signature	35	52	IPR001164	GO:0005096
	Gma03g01583	486	PRINTS	HIV Rev interacting protein signature	56	77	IPR001164	GO:0005096
	Gma03g01583	486	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	406	486	-	-
	Gma03g01583	486	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	1	408	-	-
	Gma03g01583	486	Pfam	Putative GTPase activating protein for Arf	5	107	IPR001164	GO:0005096
	Gma03g01583	486	Gene3D	Arf GTPase activating protein	1	129	IPR038508	-
	Gma03g01583	486	MobiDBLite	consensus disorder prediction	138	152	-	-
	Gma03g01583	486	MobiDBLite	consensus disorder prediction	355	486	-	-
	Gma03g01583	486	SUPERFAMILY	ArfGap/RecO-like zinc finger	5	112	IPR037278	-
	Gma03g01583	486	SMART	arf_gap_3	1	120	IPR001164	GO:0005096
	Gma03g01583	486	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	4	120	IPR001164	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma03g01583	Gma-Chr3	42101050	42105286	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma03g01583	5	83	C2H2 Transcription Factor Family	AT4G05330	52.500	1.29e-22	97.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma03g01583	K12492		-	gmx:100801306	979.548

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma03g01583	03	42101050	42105286	Gma03g01583	03	42101050	42105286	ECH
	Gma19g01633	19	45731847	45735641	Gma03g01583	03	42101050	42105286	GST
	Gma03g01583	03	42101050	42105286	Gma10g00409	10	3944522	3949953	PCT
	Gma03g01583	03	42101050	42105286	Gma13g01113	13	25307131	25311747	PCT
	Gma10g00409	10	3944522	3949953	Gma03g01583	03	42101050	42105286	PCT
	Gma13g01113	13	25307131	25311747	Gma03g01583	03	42101050	42105286	PCT