Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01570 ATGGACCACGACCACGAATACCCTATTCTCACGCCTTCAGCCTTACCTCGCCAAAAGAAACCCTCCATTGCAGACGACGATATCATGGAGCTGCTATGGCACAACGGCCAGGTCGTGGTGCAGAGTCAGAACCAACGTTCTCTGAGAAAACTTCCGCCGGTGACCAACTCCCACGACGCCTCTCCCGCCGGTCCTTCAATGGCGAGAGAGATTCGACCGCTGGTGGAGAATTTCAATCAGCATCTCTTCATGCACGAAGGCGAAATGGCTTCGTGGCTTCACTATCCTATCGACGACGACGAGCCTGCGTTGGATCAAAGCTTCGGCGCCGATTTTCTCTATTCTCCGCCGACGACGGCTAACAACAGCAGCTTCATGCAAACCCTCGGCCACACGTCTCAGCTCACGGAGCTCCGGCCGATGTCGGCGAATCCACGGCCTCCGATTCCGCCCCCGAGAAGGCCGGAACAGAGGACGCCGAACTTCGCGTACTTCTCGAGGCACAACACGAGAGCCGCGGAGCCGAGCGTGAAGGCCGCCGCGAGGGAATCCACGGTGGTGGATTCGTGCGATACGGAGGCGGCGGCTTCGAGAGTTTCGGAGACAGTAAGGAGCGCGGCGGAAGGAGGTGCCGGCGTTGCGGCGCCTTCGACGAGTGCCGGCGGTGGAAGGAGCACGATGATGTACGATTTGACGATGACGTCATCGCCTGGCGGTTCGAGTAGCTGCGACGAGCCGGTTCAGGTAGCGGCGGCGGAGGAGGATCGGAAGCGGAAGGGACGGGAGGCGGAGGAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCAGAAGCAAAGAAGCAAGTTTGTGGATCAACATCTACAAAGAGATCCCGTGCTGCCGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGCGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGTTGCAATAAGTCGGACAAAGCTTCAATGCTGGATGAAGCAATTTCGTACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGAATGGTACCTATGATGTTTCCTGGAATCCAGCAGTACATGCCAGCAATGGGAATGGGGGTTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCTGTAATGCCGTTTCCCAATATGTTACCTGGTTCGGCTTTGCCAGCGGCAACTGCAGCTGCTGCTCATTTGGGACCAAGGTTTTCCATGCCTCCTTTCCACATGCCCCATGTTCCTGCTCCTGATTCATCTAGAATGCAAGCAGCAAATCAGTCAGATAATAATATGGTCACGTCAGCTGGTCCACCTGATCCAAATCAGTCACGTATCCCAAACTTCACTGATCCTTATCAACAATATCTTGGTCCCCACCAGATGCAGTTCCAATTAATTCAGAATCAGGCAATGAACCAACCAAATGTTAGCAAGCCAAGTAACAATGGGGGCCCTGCGAATCCAGAAAACCATTAG 1509 0.5361 MDHDHEYPILTPSALPRQKKPSIADDDIMELLWHNGQVVVQSQNQRSLRKLPPVTNSHDASPAGPSMAREIRPLVENFNQHLFMHEGEMASWLHYPIDDDEPALDQSFGADFLYSPPTTANNSSFMQTLGHTSQLTELRPMSANPRPPIPPPRRPEQRTPNFAYFSRHNTRAAEPSVKAAARESTVVDSCDTEAAASRVSETVRSAAEGGAGVAAPSTSAGGGRSTMMYDLTMTSSPGGSSSCDEPVQVAAAEEDRKRKGREAEEWECQSEDVDFESEAKKQVCGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAAHLGPRFSMPPFHMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGPHQMQFQLIQNQAMNQPNVSKPSNNGGPANPENH 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01570 502 MobiDBLite consensus disorder prediction 44 65 - -
Gma03g01570 502 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 11 502 IPR031066 -
Gma03g01570 502 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 291 359 IPR036638 GO:0046983
Gma03g01570 502 MobiDBLite consensus disorder prediction 1 20 - -
Gma03g01570 502 Coils Coil 299 319 - -
Gma03g01570 502 Gene3D - 288 351 IPR036638 GO:0046983
Gma03g01570 502 SMART finulus 299 348 IPR011598 GO:0046983
Gma03g01570 502 MobiDBLite consensus disorder prediction 139 160 - -
Gma03g01570 502 CDD bHLH_AtPIF_like 293 356 - -
Gma03g01570 502 MobiDBLite consensus disorder prediction 143 157 - -
Gma03g01570 502 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 502 - -
Gma03g01570 502 MobiDBLite consensus disorder prediction 206 226 - -
Gma03g01570 502 Coils Coil 249 269 - -
Gma03g01570 502 MobiDBLite consensus disorder prediction 430 502 - -
Gma03g01570 502 MobiDBLite consensus disorder prediction 44 62 - -
Gma03g01570 502 Pfam Helix-loop-helix DNA-binding domain 297 343 IPR011598 GO:0046983
Gma03g01570 502 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Gma03g01570 502 MobiDBLite consensus disorder prediction 418 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01570 Gma-Chr3 42001615 42007907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01570 15 348 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 45.609 8.42e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma03g01570 HLH 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01570 - - gmx:100797225 954.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01570 03 42001615 42007907 Gma03g01570 03 42001615 42007907 ECH
Gma03g01570 03 42001615 42007907 Gma10g00399 10 3862085 3866565 PCT
Gma03g01570 03 42001615 42007907 Gma13g01103 13 25215347 25221084 PCT
Gma10g00399 10 3862085 3866565 Gma03g01570 03 42001615 42007907 PCT
Gma13g01103 13 25215347 25221084 Gma03g01570 03 42001615 42007907 PCT