LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma03g01554	ATGGCAACTCAAGGTCAAGTCATTACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTAACCGTCCAAGACGTTCAGGTTGCTCCGCCTCAGGCCGGCGAGGTCCGTGTCCAAATCCTCTTCACCGCTCTCTGCCACACCGATGCTTACACTTGGGGCGGCAAGGATCCCGAAGGTCTCTTCCCCTGTATTCTCGGCCACGAAGCTGCAGGGATTGTGGAGAGTGTTGGAGAAGGTGTTACTAATGTTCAGCCTGGGGATCATGTCATTCCCTGTTACCAGGCTGAGTGTGGGGAGTGCAAGACTTGCAAATCGGGGAAGACAAACCTCTGTGGCAAGGTTCGTTCCGCCACTGGAGTTGGGGTCATGCTCAATGATGGAAAGAGCCGGTTCTCCATTAATGGGAAGCCCATTTATCATTTCATGGGAACATCCACTTTTAGTCAATACACTGTTGTTCATGACGTTAGTGTAGCTAAGATTGACCCGGTAGCTCCCTTGGAGAAAGTTTGCCTTCTTGGATGTGGTGTTTCAACTGGACTTGGAGCTGTCTGGAACACTGCAAAAGTGGAGTCAGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGGCTTGCTGTTGCAGAGGGTGCAAAAACTGCTGGTGCATCCCGGGTTATTGGCATAGATATTGACAGCAAGAAGTTTGATATAGCGAAAAACTTTGGAGTCACCGAGTTTATAAATCCAAACGAACATGATAAACCAATTCAGCAGGTCATCATTGATCGCACAGATGGTGGAGTTGATTATAGCTTTGAGTGCATTGGAAATGTCTCTGTGATGAGAGCTGCTTTGGAGTGCTGCCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCAGCATCAGGGCAGGAAATATCTACCCGTCCCTTCCAGTTGGTGAGTGGACGTGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCAGGTCACAGGTGCCTTGGCTTGTAGACAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTATATTACCCATACTTTGACCCTTTCGGAGATCAACAAGGCTTTTGATCTTTTGCATGAAGGGGGATGTCTTCGTTGTGTGCTTTCAACACAAGAATGA	1140	0.486	MATQGQVITCKAAVAWEPNKPLTVQDVQVAPPQAGEVRVQILFTALCHTDAYTWGGKDPEGLFPCILGHEAAGIVESVGEGVTNVQPGDHVIPCYQAECGECKTCKSGKTNLCGKVRSATGVGVMLNDGKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVSTGLGAVWNTAKVESGSIVAIFGLGTVGLAVAEGAKTAGASRVIGIDIDSKKFDIAKNFGVTEFINPNEHDKPIQQVIIDRTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVSGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHTLTLSEINKAFDLLHEGGCLRCVLSTQE	379

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma03g01554	379	SUPERFAMILY	GroES-like	326	375	IPR011032	-
Gma03g01554	379	Gene3D	-	13	372	-	-
Gma03g01554	379	TIGRFAM	adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	10	375	IPR014183	GO:0006069\|GO:0008270\|GO:0051903
Gma03g01554	379	Pfam	Alcohol dehydrogenase GroES-like domain	35	162	IPR013154	-
Gma03g01554	379	ProSitePatterns	Zinc-containing alcohol dehydrogenases signature.	68	82	IPR002328	GO:0008270\|GO:0016491
Gma03g01554	379	SUPERFAMILY	GroES-like	3	197	IPR011032	-
Gma03g01554	379	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	168	341	IPR036291	-
Gma03g01554	379	CDD	alcohol_DH_class_III	8	375	IPR014183	GO:0006069\|GO:0008270\|GO:0051903
Gma03g01554	379	PANTHER	S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE	3	378	-	-
Gma03g01554	379	PANTHER	ALCOHOL DEHYDROGENASE	3	378	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma03g01554	Gma-Chr3	41782487	41785701	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma03g01554	10	331	Monolignol Biosynthesis Gene Families	AT1G72680	26.364	5.24e-13	67.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma03g01554	K00121		-	gmx:100499743	777.319

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gma03g01554	03	41782487	41785701	Gma03g01554	03	41782487	41785701	ECH
Gma19g01610	19	45476961	45480835	Gma03g01554	03	41782487	41785701	GST
Gma03g01554	03	41782487	41785701	Gma10g00385	10	3635376	3639962	PCT
Gma10g00385	10	3635376	3639962	Gma03g01554	03	41782487	41785701	PCT

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