Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01554 ATGGCAACTCAAGGTCAAGTCATTACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTAACCGTCCAAGACGTTCAGGTTGCTCCGCCTCAGGCCGGCGAGGTCCGTGTCCAAATCCTCTTCACCGCTCTCTGCCACACCGATGCTTACACTTGGGGCGGCAAGGATCCCGAAGGTCTCTTCCCCTGTATTCTCGGCCACGAAGCTGCAGGGATTGTGGAGAGTGTTGGAGAAGGTGTTACTAATGTTCAGCCTGGGGATCATGTCATTCCCTGTTACCAGGCTGAGTGTGGGGAGTGCAAGACTTGCAAATCGGGGAAGACAAACCTCTGTGGCAAGGTTCGTTCCGCCACTGGAGTTGGGGTCATGCTCAATGATGGAAAGAGCCGGTTCTCCATTAATGGGAAGCCCATTTATCATTTCATGGGAACATCCACTTTTAGTCAATACACTGTTGTTCATGACGTTAGTGTAGCTAAGATTGACCCGGTAGCTCCCTTGGAGAAAGTTTGCCTTCTTGGATGTGGTGTTTCAACTGGACTTGGAGCTGTCTGGAACACTGCAAAAGTGGAGTCAGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGGCTTGCTGTTGCAGAGGGTGCAAAAACTGCTGGTGCATCCCGGGTTATTGGCATAGATATTGACAGCAAGAAGTTTGATATAGCGAAAAACTTTGGAGTCACCGAGTTTATAAATCCAAACGAACATGATAAACCAATTCAGCAGGTCATCATTGATCGCACAGATGGTGGAGTTGATTATAGCTTTGAGTGCATTGGAAATGTCTCTGTGATGAGAGCTGCTTTGGAGTGCTGCCACAAGGGCTGGGGAACATCAGTTATTGTGGGTGTTGCAGCATCAGGGCAGGAAATATCTACCCGTCCCTTCCAGTTGGTGAGTGGACGTGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCAGGTCACAGGTGCCTTGGCTTGTAGACAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTATATTACCCATACTTTGACCCTTTCGGAGATCAACAAGGCTTTTGATCTTTTGCATGAAGGGGGATGTCTTCGTTGTGTGCTTTCAACACAAGAATGA 1140 0.486 MATQGQVITCKAAVAWEPNKPLTVQDVQVAPPQAGEVRVQILFTALCHTDAYTWGGKDPEGLFPCILGHEAAGIVESVGEGVTNVQPGDHVIPCYQAECGECKTCKSGKTNLCGKVRSATGVGVMLNDGKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCGVSTGLGAVWNTAKVESGSIVAIFGLGTVGLAVAEGAKTAGASRVIGIDIDSKKFDIAKNFGVTEFINPNEHDKPIQQVIIDRTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVSGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHTLTLSEINKAFDLLHEGGCLRCVLSTQE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01554 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Gma03g01554 379 Gene3D - 13 372 - -
Gma03g01554 379 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Gma03g01554 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Gma03g01554 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Gma03g01554 379 SUPERFAMILY GroES-like 3 197 IPR011032 -
Gma03g01554 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Gma03g01554 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Gma03g01554 379 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 3 378 - -
Gma03g01554 379 PANTHER ALCOHOL DEHYDROGENASE 3 378 - -
Gma03g01554 379 Gene3D - 182 320 - -
Gma03g01554 379 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01554 Gma-Chr3 41782487 41785701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01554 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.364 5.24e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01554 K00121 - gmx:100499743 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01554 03 41782487 41785701 Gma03g01554 03 41782487 41785701 ECH
Gma19g01610 19 45476961 45480835 Gma03g01554 03 41782487 41785701 GST
Gma03g01554 03 41782487 41785701 Gma10g00385 10 3635376 3639962 PCT
Gma10g00385 10 3635376 3639962 Gma03g01554 03 41782487 41785701 PCT