Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01541 ATGTCTAAAGATGACAACTCTTCTTCACTGGATTCTTCTTCTTCTGACCTTCAATTGTCTCTCTCTTTAACACTCTCTCCCTATGCCACCACTTCTTCTCCTTCATCTATTTCTCATTCCTGTTCTGCTGCTCTTGCCACCGCTGCCAGTCAAGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAATATCTATAATAGCCAGGCAAAATCACCAGCCACAGAAGTATTCAATTCTACAGTTGACAACAAAAGAGCAAGCAATAGTACTGGGGTTAGGAAGACTGCAGATGGTGGCAGTGATAGTAGCAACATTATTTTCAAAGAAAAAGGAAACCTCAGGAGTTCCCTGTTTGTGAAAGTAAAAATGGATGGGATACCAATTGGAAGGAAGGTTGATTTAGGTGCTCATGGTTCCTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAGCTACAGTCCTCACTCACAAAGTAGGATCAAATGGAGAAGATCACGGTACTGAAGTTGGAGCAGATGGGCATTCAAAATTGCTGCATGGTTCTTCTGACCTTgtgctcacttatgaagacaaggaaggagactggatgcttgtgggagatgttccttggtggatgttccttaactctgtgaggaggctaagaatcatgagGACACCTGAAGCTAATGGACTTGCCCCAAGATTGAAGGAAAAGAACAGAAGATCGAAATGCAAGCTCATATAG 738 0.3659 MSKDDNSSSLDSSSSDLQLSLSLTLSPYATTSSPSSISHSCSAALATAASQVVGWPPLGAYRMNIYNSQAKSPATEVFNSTVDNKRASNSTGVRKTADGGSDSSNIIFKEKGNLRSSLFVKVKMDGIPIGRKVDLGAHGSYETLAQTLEDMFDESATVLTHKVGSNGEDHGTEVGADGHSKLLHGSSDLVLTYEDKEGDWMLVGDVPWWMFLNSVRRLRIMRTPEANGLAPRLKEKNRRSKCKLI 245
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01541 245 SUPERFAMILY CAD & PB1 domains 113 221 - -
Gma03g01541 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 236 IPR003311 GO:0005634|GO:0006355
Gma03g01541 245 Gene3D - 112 235 - -
Gma03g01541 245 Pfam AUX/IAA family 39 232 IPR033389 -
Gma03g01541 245 ProSiteProfiles PB1 domain profile. 117 225 IPR000270 GO:0005515
Gma03g01541 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 9 236 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma03g01541 Gma-Chr3 41650959 41655331 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01541 121 231 B3 DNA Binding Superfamily AT4G23980 33.333 2.63e-11 61.2
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gma03g01541 AUX_IAA 4.7e-57 CL0072
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01541 03 41650959 41655331 Gma03g01541 03 41650959 41655331 ECH
Gma19g01595 19 45323876 45328285 Gma03g01541 03 41650959 41655331 GST
Gma03g01541 03 41650959 41655331 Gma10g00379 10 3596128 3599997 PCT
Gma03g01541 03 41650959 41655331 Gma13g01077 13 24915698 24919758 PCT
Gma10g00379 10 3596128 3599997 Gma03g01541 03 41650959 41655331 PCT
Gma13g01077 13 24915698 24919758 Gma03g01541 03 41650959 41655331 PCT