Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01534 ATGGCGCCCAATCCAAGAGTGGTGGCGGCCTTTACGGCAATGGCGAATCTCGGGATTCATGAATCAAAAGTGAAACCAGTGTTGAAGAAACTGCTTAAATTGTATGATAAGAACTGGGCACTCATTGAAGAAGAGAGTTATAGGGCCCTGGCTGATGCAATATTTGAGGAGGAAGAGAATAAGGTCCTATGGCTGCTGAATTTGTGTTCTGGCTTTTCAAACATTCAGAACGGAGTTGTGGACGATGAAGAAGCTCATACGCATGGGGAGCCTGTGCGACCTTTGAAGAGGTTGCGTTTGAGAGGCCAAGAGGGTCAATCTTTGCGCCCTCTGACTAGCAGTGGCCCCAGCTCAGCTGCATTTCCGTTGAAAGCGCCTAAATTAGAAGATGGGGCAGTGCCCGAGAGTAGTTCCAGACGGCAGCCTCAAAGCATGGCTGCATTATCTGATGGAAATGCAAGGATTGGTGCTCGTCATGTTCCCCCACAAGATGCTGTTGTCGACAAGGGAAAGAAACCTATATCACCTCAACTTACTCCCAGAGCGAGAAGGTCCCTTGCAGAGCCAACAGTTGAAGCAGGAGCTGCTCTGTTGGCAAATAACAAAATGCCTCATCCCTTTATTTTGATCAAGCCCAAGGATGAGCCTGTTGATGGTATACCAGATTATGAGATTCCCCTTGCAGTGATTCCTCCTGAACCATCAAGTGGAGGAGACTCTCTAATGGGTGCAGCTGGAAAGAAAGATTGCCATGACACTGTGGTATCACAGTGCAGAGATGAAGACGTTGAACATGAATATGTTTTTCCTTCCTCAAATGAAGAAGCAACTTCTAATGTAGATGTAGCTTTGTCGTCTATGGGTGAGGAACAATCTGTAAAGATAACACAAACTGATGATGTTTCAAAGGAATCTGAGACCAATGACTCACCTATTGTCAGAGGAAACAAAGATTCGGTCATTGCAAATGGATCAATCAGTGTTGAGTCTTCTGCCATGGCTGAACTTCAAGTTCCTAGTTCTATACCCTGCTCGAGTGATCTGGATAATGCTGTACCAGCTCCCAAGAAGGTTGGAATGAATGGTTTCTTACAAAGTGATAGTGGAAAGGAGCTGGAGCATCCTATAATCCCAAATTCACGTACTTTAGTGGTTGTTCCAAAACATCAGCTTACTAATGATGATGTAAGGGCAGTTCATGATGTTAATGACCTAACAAAGGGAGAAGAAAGAGTGAAAATTTCATGGGTGAATAACACTACTAATGATTTCCCACCACCCTGTCACTACATACCCCGAAACCTTGTGTTCCGAGAGGCTTATGTTAATATTTCTCTATCTCGTATTGGGAATGAGGATTGTTGTTCAACTTGTATGGGCAATTGTGTATTGTCATCTAAATCATGTTCTTGTACAAATAAAACTGGGGGTGAATTTGCTTACACTGCAAAAGGCCTACTAAAGGAAGAGTTCTTGGATGAGTGTATTGCCCTCAACCGTGATCCTCAAAATTATTTCTATTGCAAAGCCTGTCCTCTTGAAAGATCAAAGAATGATGATTGTTTAGAACCATGTAAAGGACATTTAAAGAGAAAGTTTATTAAAGAGTGCTGGAGCAAATGCGGCTGTGGGAAACATTGTGGTAATCGGGTTGTCCAGCGTGGAATAACTTGCAAGTTGCAGGTGTTTTTGACTTCAGACAGAAAAGGGTGGGGTCTTCGTACCTTAGAAGATCTTCAAAAAGGCGCATTTGTATGTGAGTTTGTTGGGGAAATTTTAACCATCAAGGAGTTGCATGAGAGGCGCTTGAAATATCCCAAAAATGGGAAATATACATACCCAATTTTATTGGATGCAGATTGGGGTTCAGGAATTGTGAAGGATAGAGAAGCTCTTTGCTTATATGCGGCATCGTATGGAAATGCTGCTAGATTTATTAATCACAGATGTTTGGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGGGCCCAACTCATCACTACTATCATTTTGCCTTCTTCACATCCAGAAAAATAGCAGCACAGGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGACCATGATGATCATCCTGTTGAGCTGTTCCAGTGCAGATGTGGCAGTAAATTCTGTAGGAATATTAAGCGATCAAATAGATCCATGAGATCGTCAAGTTCATGA 2190 0.4283 MAPNPRVVAAFTAMANLGIHESKVKPVLKKLLKLYDKNWALIEEESYRALADAIFEEEENKVLWLLNLCSGFSNIQNGVVDDEEAHTHGEPVRPLKRLRLRGQEGQSLRPLTSSGPSSAAFPLKAPKLEDGAVPESSSRRQPQSMAALSDGNARIGARHVPPQDAVVDKGKKPISPQLTPRARRSLAEPTVEAGAALLANNKMPHPFILIKPKDEPVDGIPDYEIPLAVIPPEPSSGGDSLMGAAGKKDCHDTVVSQCRDEDVEHEYVFPSSNEEATSNVDVALSSMGEEQSVKITQTDDVSKESETNDSPIVRGNKDSVIANGSISVESSAMAELQVPSSIPCSSDLDNAVPAPKKVGMNGFLQSDSGKELEHPIIPNSRTLVVVPKHQLTNDDVRAVHDVNDLTKGEERVKISWVNNTTNDFPPPCHYIPRNLVFREAYVNISLSRIGNEDCCSTCMGNCVLSSKSCSCTNKTGGEFAYTAKGLLKEEFLDECIALNRDPQNYFYCKACPLERSKNDDCLEPCKGHLKRKFIKECWSKCGCGKHCGNRVVQRGITCKLQVFLTSDRKGWGLRTLEDLQKGAFVCEFVGEILTIKELHERRLKYPKNGKYTYPILLDADWGSGIVKDREALCLYAASYGNAARFINHRCLDANLIEIPVEVEGPTHHYYHFAFFTSRKIAAQEELTWDYGINFDDHDDHPVELFQCRCGSKFCRNIKRSNRSMRSSSS 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01534 729 MobiDBLite consensus disorder prediction 292 317 - -
Gma03g01534 729 SUPERFAMILY SET domain 397 697 IPR046341 -
Gma03g01534 729 Gene3D - 1 60 IPR043017 -
Gma03g01534 729 ProSiteProfiles Pre-SET domain profile. 454 555 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma03g01534 729 MobiDBLite consensus disorder prediction 104 123 - -
Gma03g01534 729 Pfam SET domain 570 691 IPR001214 GO:0005515
Gma03g01534 729 MobiDBLite consensus disorder prediction 296 311 - -
Gma03g01534 729 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 729 - -
Gma03g01534 729 SMART preset_2 402 542 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma03g01534 729 ProSiteProfiles SET domain profile. 558 691 IPR001214 GO:0005515
Gma03g01534 729 Pfam Pre-SET motif 406 550 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Gma03g01534 729 MobiDBLite consensus disorder prediction 129 186 - -
Gma03g01534 729 Gene3D SET domain 391 718 IPR046341 -
Gma03g01534 729 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Gma03g01534 729 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 729 IPR025776 -
Gma03g01534 729 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 729 - -
Gma03g01534 729 SMART set_7 558 697 IPR001214 GO:0005515
Gma03g01534 729 CDD SET_SETDB-like 426 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01534 Gma-Chr3 41595357 41602416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01534 404 715 Su(var)3-9 homologs AT1G73100 30.488 6.65e-30 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gma03g01534 Pre-SET 3.5e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01534 - - gmx:100788602 1427.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01534 03 41595357 41602416 Gma03g01534 03 41595357 41602416 ECH
Gma19g01589 19 45272266 45279277 Gma03g01534 03 41595357 41602416 GST
Gma10g00376 10 3573689 3579532 Gma03g01534 03 41595357 41602416 PCT
Gma13g01073 13 24886508 24891815 Gma03g01534 03 41595357 41602416 PCT