Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01529 ATGTTAATGTTTGAGCCTCTTTGTAAGAGGGATCGTGTCGAAGGCCAAATCCTAGATTTGGACATGACGATGAAAGATGGGATTTTGGATGGTGGTGTTTATTCTAGGGATGTGGGAAATGGGATTGGTGAAAAATTGAATCTTGCAAAAATGATTGAAGAGTTGAACTTGTATGAAGTTTCCTATGTATTCGTTTGTCCAATTTTCCTTGAGCCAATGCTTGATCCTGTGACCCTTTGCCAGACCTATGAGAGGTGCAGCATTCTCAAATGGTTCAGTTTGGGCCACTTCACTTGCTCCACCACAATTCAAGAACTTTGGGATGATTCCCTCACTCCCAACACCACCCTCCAAAGTTTGATATCCACTTGA 372 0.422 MLMFEPLCKRDRVEGQILDLDMTMKDGILDGGVYSRDVGNGIGEKLNLAKMIEELNLYEVSYVFVCPIFLEPMLDPVTLCQTYERCSILKWFSLGHFTCSTTIQELWDDSLTPNTTLQSLIST 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01529 123 PANTHER WDSAM1 PROTEIN 31 123 IPR045185 GO:0061630
Gma03g01529 123 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 31 123 - -
Gma03g01529 123 SUPERFAMILY RING/U-box 56 122 - -
Gma03g01529 123 SMART Ubox_2 63 123 IPR003613 GO:0004842|GO:0016567
Gma03g01529 123 ProSiteProfiles U-box domain profile. 59 123 IPR003613 GO:0004842|GO:0016567
Gma03g01529 123 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 123 IPR013083 -
Gma03g01529 123 Pfam U-box domain 64 121 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01529 Gma-Chr3 41569713 41570084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01529 1 123 U-box Gene Family AT5G65920 55.385 1.75e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01529 - - gmx:100781741 186.422