Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gma03g01525 | ATGGATGATTCTGGAAGTAAAACTAAACTACTGAATCCATGGATGCTCCACTTTCAGAAACTCGCTCTCGAACTCAAGTGCCCTCTCTGTTTGAGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAATTCATGTTTGGCTGATTGCATAACGGCTGGGTCTGAATGCGCTGTTTGCAAGACAACGTATGCTCAAACAGATGTAAGGCACATACCTTTCGTGGAAAACGTGGTGGCAATATATAGAAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGTCGCGTTCTTCTGGTGGTGGGAGGGTTTTGGAGCCGTGCCAAACAATTCTTAATTCAACTTCTAGTAGTTTAAAAACTGGCAAGCTTCCTCGGAACTTAACTAATTTGAATGAGGTTGGGGTTGGCCAAACTTTCAAATCCAAGAGTGTGGTGCATGATAAAGCTGAGGAGCTTGAGTTGTCTTGTGGGAGAGGGAAGCCCAATCCAATGCAATCTTCCCAGATGGGACTTGGGGGCCGAGAACAGTGTGGAGTTATGGAAATGGATGTGAATCAAGTAACACAATCAGCACCTGATAGCCCGCCCTTTTGTGATACCAAAGGTTCAGATAATGACTGCAGTGATCAAGATAGTGAGCATCCATTACCTCCTGGCAGATTGGAAAATTCTTCACTAAACAGAGCAAGCGCAGGAAATGGAAATTTGAAAGAAAGAATGGGACAGCTTAGGTCTGAAAGTTCGGTCTCTGAAACTGAGGGTCTGGCAAGGGATCTCAAGAGACAGAAGAATCTGGACTTTAAACCTGGAAAGGACCCTGGCGCACCATTGCCCACAAATGCTTCAATTGACTTGTGTCCAATTGGAAGGATCTGCTCATTTTGCCAATCCTCTAAAATCTCAGAGGTTACTGGACCAATGCTGCATTATGCAAATGGGAACTTAGTTACCGGAGATGCAGCCATGAAACCAAATGTTGTACCTGTGCATAGAATTTGCATTGACTGGGCACCACAAGTGTACTTTGATGGTGAAGTGGTTAAGAATTTGAAGGCAGAGGTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGCTGCTATGTCAAATCCTGTAGAAGAACTTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCATGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTGAGAAAATTAGGTCCAAGAAACAGGCAACACAGAAGCATCCCACTTTGTCTCATCTGCCATCTCACCACTCAAATCCTCTTGAAGCTTCCCATGATGATGATGTAAAATTAGTATTTTGTGGATCTGCTCTATCAAATGAAGAAAAGGTACTTTTGATCAATTATGCAAGCAAGGTTGGTGCTACTGTGACCAAGTTTTGGACCTCAAATGTCACTCATGTAATTGCAGCAACTGATGCACATGGAGCATGCTCCAGGACATTGAAAGTTCTGATGGCAATTCTAAATGGACGATGGGTTCTAAAAATGGATTGGATAAAAGCATGCATGGAAGAGGTAAATCCTGTGGAGGAAGAACCATATGAAATTAATCTTGACAACCAAGGGTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGAGCCAAAGCTATTCAATGGCTTAAAGTTTTATTTTTCTGGGGATTATGTGTCAACTTATAAGGAAGATCTCGAAGAATTAATTGAAGTGGGAGGAGGTACTGTTTTGAGAAGCAAGGAAGAATTGGAATCACAAAGACATGAATGCAAAGGAGATTCTTCACAGTTGCTGATTGTTTACAACCTTGATCCTCCTCAAGGATGCAAATTGGGGGAGGAAGTTTCAATTCTTTGGCAAAGGCTAAACGATGCAGAGGATTTAGCTGCTAACACTTTACAAGTCATTGGTCACACATGGATTCTTGAATCAATTGCTGCATGTAAATTGCAGCCTTTTGTTAACTAA | 2037 | 0.4261 | MDDSGSKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCITAGSECAVCKTTYAQTDVRHIPFVENVVAIYRSLDATFCASLFQSRSSGGGRVLEPCQTILNSTSSSLKTGKLPRNLTNLNEVGVGQTFKSKSVVHDKAEELELSCGRGKPNPMQSSQMGLGGREQCGVMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPGRLENSSLNRASAGNGNLKERMGQLRSESSVSETEGLARDLKRQKNLDFKPGKDPGAPLPTNASIDLCPIGRICSFCQSSKISEVTGPMLHYANGNLVTGDAAMKPNVVPVHRICIDWAPQVYFDGEVVKNLKAEVARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISDCRWDHEDFLLLCPVHSNVKFPCEKIRSKKQATQKHPTLSHLPSHHSNPLEASHDDDVKLVFCGSALSNEEKVLLINYASKVGATVTKFWTSNVTHVIAATDAHGACSRTLKVLMAILNGRWVLKMDWIKACMEEVNPVEEEPYEINLDNQGCQGGPKAGRLRALANEPKLFNGLKFYFSGDYVSTYKEDLEELIEVGGGTVLRSKEELESQRHECKGDSSQLLIVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVN | 678 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gma03g01525 | 678 | Pfam | BRCA1 C Terminus (BRCT) domain | 462 | 530 | IPR001357 | - | |
Gma03g01525 | 678 | MobiDBLite | consensus disorder prediction | 193 | 283 | - | - | |
Gma03g01525 | 678 | Pfam | BRCT domain, a BRCA1 C-terminus domain | 566 | 675 | IPR001357 | - | |
Gma03g01525 | 678 | SUPERFAMILY | RING/U-box | 24 | 87 | - | - | |
Gma03g01525 | 678 | ProSiteProfiles | Extended PHD (ePHD) domain profile. | 294 | 414 | IPR034732 | - | |
Gma03g01525 | 678 | Gene3D | BRCT domain | 566 | 671 | IPR036420 | - | |
Gma03g01525 | 678 | SUPERFAMILY | BRCT domain | 457 | 544 | IPR036420 | - | |
Gma03g01525 | 678 | CDD | BRCT_Bard1_rpt1 | 457 | 530 | - | - | |
Gma03g01525 | 678 | Pfam | Zinc finger, C3HC4 type (RING finger) | 27 | 64 | IPR018957 | GO:0046872 | |
Gma03g01525 | 678 | MobiDBLite | consensus disorder prediction | 256 | 273 | - | - | |
Gma03g01525 | 678 | SMART | ring_2 | 27 | 64 | IPR001841 | - | |
Gma03g01525 | 678 | SMART | ring_2 | 367 | 413 | IPR001841 | - | |
Gma03g01525 | 678 | SMART | BRCT_7 | 566 | 671 | IPR001357 | - | |
Gma03g01525 | 678 | SMART | BRCT_7 | 444 | 533 | IPR001357 | - | |
Gma03g01525 | 678 | PANTHER | BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 | 9 | 676 | - | - | |
Gma03g01525 | 678 | Gene3D | BRCT domain | 454 | 559 | IPR036420 | - | |
Gma03g01525 | 678 | ProSiteProfiles | BRCT domain profile. | 453 | 543 | IPR001357 | - | |
Gma03g01525 | 678 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 294 | 416 | IPR013083 | - | |
Gma03g01525 | 678 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 96 | IPR013083 | - | |
Gma03g01525 | 678 | SUPERFAMILY | BRCT domain | 568 | 676 | IPR036420 | - | |
Gma03g01525 | 678 | ProSitePatterns | Zinc finger RING-type signature. | 42 | 51 | IPR017907 | - | |
Gma03g01525 | 678 | ProSiteProfiles | BRCT domain profile. | 564 | 678 | IPR001357 | - | |
Gma03g01525 | 678 | ProSiteProfiles | Zinc finger RING-type profile. | 27 | 65 | IPR001841 | - | |
Gma03g01525 | 678 | PANTHER | BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 | 9 | 676 | IPR031099 | GO:0006281|GO:0006974 | |
Gma03g01525 | 678 | Pfam | PHD-like zinc-binding domain | 335 | 413 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gma03g01525 | Gma-Chr3 | 41490937 | 41496099 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gma03g01525 | 487 | 600 | Core DNA Replication Machinery Family | AT4G02110 | 30.000 | 2.93e-06 | 48.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gma03g01525 | K10683 | - | gmx:100784883 | 1379.77 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gma03g01525 | 03 | 41490937 | 41496099 | Gma03g01525 | 03 | 41490937 | 41496099 | ECH | |
Gma19g01579 | 19 | 45200287 | 45206864 | Gma03g01525 | 03 | 41490937 | 41496099 | GST |