Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01525 ATGGATGATTCTGGAAGTAAAACTAAACTACTGAATCCATGGATGCTCCACTTTCAGAAACTCGCTCTCGAACTCAAGTGCCCTCTCTGTTTGAGTTTGTTCAAGAGGCCGGTGTTACTTCCATGCAACCACTTGTTCTGCAATTCATGTTTGGCTGATTGCATAACGGCTGGGTCTGAATGCGCTGTTTGCAAGACAACGTATGCTCAAACAGATGTAAGGCACATACCTTTCGTGGAAAACGTGGTGGCAATATATAGAAGCTTGGATGCCACTTTTTGTGCTAGTTTGTTTCAGTCGCGTTCTTCTGGTGGTGGGAGGGTTTTGGAGCCGTGCCAAACAATTCTTAATTCAACTTCTAGTAGTTTAAAAACTGGCAAGCTTCCTCGGAACTTAACTAATTTGAATGAGGTTGGGGTTGGCCAAACTTTCAAATCCAAGAGTGTGGTGCATGATAAAGCTGAGGAGCTTGAGTTGTCTTGTGGGAGAGGGAAGCCCAATCCAATGCAATCTTCCCAGATGGGACTTGGGGGCCGAGAACAGTGTGGAGTTATGGAAATGGATGTGAATCAAGTAACACAATCAGCACCTGATAGCCCGCCCTTTTGTGATACCAAAGGTTCAGATAATGACTGCAGTGATCAAGATAGTGAGCATCCATTACCTCCTGGCAGATTGGAAAATTCTTCACTAAACAGAGCAAGCGCAGGAAATGGAAATTTGAAAGAAAGAATGGGACAGCTTAGGTCTGAAAGTTCGGTCTCTGAAACTGAGGGTCTGGCAAGGGATCTCAAGAGACAGAAGAATCTGGACTTTAAACCTGGAAAGGACCCTGGCGCACCATTGCCCACAAATGCTTCAATTGACTTGTGTCCAATTGGAAGGATCTGCTCATTTTGCCAATCCTCTAAAATCTCAGAGGTTACTGGACCAATGCTGCATTATGCAAATGGGAACTTAGTTACCGGAGATGCAGCCATGAAACCAAATGTTGTACCTGTGCATAGAATTTGCATTGACTGGGCACCACAAGTGTACTTTGATGGTGAAGTGGTTAAGAATTTGAAGGCAGAGGTGGCAAGGGGAGCAAAACTTAAATGCAGTAAATGTAATCTAAAGGGAGCTGCTCTTGGCTGCTATGTCAAATCCTGTAGAAGAACTTATCATGTTCCTTGTGCAATGGACATCTCAGATTGCCGTTGGGATCATGAGGATTTTCTCTTGCTCTGTCCTGTCCATTCAAATGTCAAATTTCCATGTGAGAAAATTAGGTCCAAGAAACAGGCAACACAGAAGCATCCCACTTTGTCTCATCTGCCATCTCACCACTCAAATCCTCTTGAAGCTTCCCATGATGATGATGTAAAATTAGTATTTTGTGGATCTGCTCTATCAAATGAAGAAAAGGTACTTTTGATCAATTATGCAAGCAAGGTTGGTGCTACTGTGACCAAGTTTTGGACCTCAAATGTCACTCATGTAATTGCAGCAACTGATGCACATGGAGCATGCTCCAGGACATTGAAAGTTCTGATGGCAATTCTAAATGGACGATGGGTTCTAAAAATGGATTGGATAAAAGCATGCATGGAAGAGGTAAATCCTGTGGAGGAAGAACCATATGAAATTAATCTTGACAACCAAGGGTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGCCAATGAGCCAAAGCTATTCAATGGCTTAAAGTTTTATTTTTCTGGGGATTATGTGTCAACTTATAAGGAAGATCTCGAAGAATTAATTGAAGTGGGAGGAGGTACTGTTTTGAGAAGCAAGGAAGAATTGGAATCACAAAGACATGAATGCAAAGGAGATTCTTCACAGTTGCTGATTGTTTACAACCTTGATCCTCCTCAAGGATGCAAATTGGGGGAGGAAGTTTCAATTCTTTGGCAAAGGCTAAACGATGCAGAGGATTTAGCTGCTAACACTTTACAAGTCATTGGTCACACATGGATTCTTGAATCAATTGCTGCATGTAAATTGCAGCCTTTTGTTAACTAA 2037 0.4261 MDDSGSKTKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCNHLFCNSCLADCITAGSECAVCKTTYAQTDVRHIPFVENVVAIYRSLDATFCASLFQSRSSGGGRVLEPCQTILNSTSSSLKTGKLPRNLTNLNEVGVGQTFKSKSVVHDKAEELELSCGRGKPNPMQSSQMGLGGREQCGVMEMDVNQVTQSAPDSPPFCDTKGSDNDCSDQDSEHPLPPGRLENSSLNRASAGNGNLKERMGQLRSESSVSETEGLARDLKRQKNLDFKPGKDPGAPLPTNASIDLCPIGRICSFCQSSKISEVTGPMLHYANGNLVTGDAAMKPNVVPVHRICIDWAPQVYFDGEVVKNLKAEVARGAKLKCSKCNLKGAALGCYVKSCRRTYHVPCAMDISDCRWDHEDFLLLCPVHSNVKFPCEKIRSKKQATQKHPTLSHLPSHHSNPLEASHDDDVKLVFCGSALSNEEKVLLINYASKVGATVTKFWTSNVTHVIAATDAHGACSRTLKVLMAILNGRWVLKMDWIKACMEEVNPVEEEPYEINLDNQGCQGGPKAGRLRALANEPKLFNGLKFYFSGDYVSTYKEDLEELIEVGGGTVLRSKEELESQRHECKGDSSQLLIVYNLDPPQGCKLGEEVSILWQRLNDAEDLAANTLQVIGHTWILESIAACKLQPFVN 678
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01525 678 Pfam BRCA1 C Terminus (BRCT) domain 462 530 IPR001357 -
Gma03g01525 678 MobiDBLite consensus disorder prediction 193 283 - -
Gma03g01525 678 Pfam BRCT domain, a BRCA1 C-terminus domain 566 675 IPR001357 -
Gma03g01525 678 SUPERFAMILY RING/U-box 24 87 - -
Gma03g01525 678 ProSiteProfiles Extended PHD (ePHD) domain profile. 294 414 IPR034732 -
Gma03g01525 678 Gene3D BRCT domain 566 671 IPR036420 -
Gma03g01525 678 SUPERFAMILY BRCT domain 457 544 IPR036420 -
Gma03g01525 678 CDD BRCT_Bard1_rpt1 457 530 - -
Gma03g01525 678 Pfam Zinc finger, C3HC4 type (RING finger) 27 64 IPR018957 GO:0046872
Gma03g01525 678 MobiDBLite consensus disorder prediction 256 273 - -
Gma03g01525 678 SMART ring_2 27 64 IPR001841 -
Gma03g01525 678 SMART ring_2 367 413 IPR001841 -
Gma03g01525 678 SMART BRCT_7 566 671 IPR001357 -
Gma03g01525 678 SMART BRCT_7 444 533 IPR001357 -
Gma03g01525 678 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 9 676 - -
Gma03g01525 678 Gene3D BRCT domain 454 559 IPR036420 -
Gma03g01525 678 ProSiteProfiles BRCT domain profile. 453 543 IPR001357 -
Gma03g01525 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 416 IPR013083 -
Gma03g01525 678 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 96 IPR013083 -
Gma03g01525 678 SUPERFAMILY BRCT domain 568 676 IPR036420 -
Gma03g01525 678 ProSitePatterns Zinc finger RING-type signature. 42 51 IPR017907 -
Gma03g01525 678 ProSiteProfiles BRCT domain profile. 564 678 IPR001357 -
Gma03g01525 678 ProSiteProfiles Zinc finger RING-type profile. 27 65 IPR001841 -
Gma03g01525 678 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 9 676 IPR031099 GO:0006281|GO:0006974
Gma03g01525 678 Pfam PHD-like zinc-binding domain 335 413 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gma03g01525 Gma-Chr3 41490937 41496099 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01525 487 600 Core DNA Replication Machinery Family AT4G02110 30.000 2.93e-06 48.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01525 K10683 - gmx:100784883 1379.77
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01525 03 41490937 41496099 Gma03g01525 03 41490937 41496099 ECH
Gma19g01579 19 45200287 45206864 Gma03g01525 03 41490937 41496099 GST