Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01515 ATGTCTTCTTTGATGATGGATCATGTTATTGGTGGGAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATATACAAACCGGAGAGGAGGTGGCTGTCAAGCTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCATCTCAAGTGGTTTGGAGTAGAGGGAGACTACAATGTCATGGCAATCGATCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCTAGAGGTTTCCTTCACCGTGACATCAAGCCAGACAATTTTTTAATGGGCCTAGGACGTAAAGCAAACCAGGTGTACATCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCCCGGTATGCAAGTGTCAACACCCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCCTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGAAGAAAATGTCAACTTCGTTAGAGGGGCTCTGCAAGTCATATCCCTCAGAGTTTGTATCATATTTTCAATATTGCCGAACATTGCGATTTGAAGACAAGCCTGATTATTCATATTTAAAGAGGCTGTTTCGAGATTTATTTATTAGAGAAGGCTATCAATTTGACTATGTTTTTGATTGGACTATATTGAAGTATCCGCAGATTGGCGGCAGCAGCTCTAGAGGGCGGCATGAAAGTGGCAAGGCAGCTATGCATGCAGGACCATCTGTACAAAAGCCAGAAAAAGTATCAGTTGGGAAAGAGATTCGAGAAAAATTCTCTGGTGCTGTTGAAGCTTTCTCCCGGAGGAACCCAACAAGTCCTAGTCCTCGTGGTGATCACTCCAAACGTAGGAGTTTTGAGGAAGTAGCAGTACACAAAGATGTGTATCATGATCAAGAGAAGGGACGCAATTCGTCCCGATATGGCAGCAGTTCAAGAAGACCCATAATCTCATCGTCAACCAGGCCAAGTTCCTCTGGTGATCATACTGACAGTCGTACTGGCCGGCTAACCTCAAGTGGAAGCCGACAATCTGCCACACATAGAAATATTCAACCTATGCACGAGACAAAACAACCAACTTACACACGCTCTGGATCCACCAGAGGCAACCGTGATGATCCTCTGCGGAGTTTTGAGCTCCTCTCTATCAGGAAGTAA 1407 0.4328 MSSLMMDHVIGGKFKLGRKIGSGSFGELYIAVNIQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTSLEGLCKSYPSEFVSYFQYCRTLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSSRGRHESGKAAMHAGPSVQKPEKVSVGKEIREKFSGAVEAFSRRNPTSPSPRGDHSKRRSFEEVAVHKDVYHDQEKGRNSSRYGSSSRRPIISSSTRPSSSGDHTDSRTGRLTSSGSRQSATHRNIQPMHETKQPTYTRSGSTRGNRDDPLRSFELLSIRK 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01515 468 CDD STKc_CK1_delta_epsilon 13 287 - -
Gma03g01515 468 MobiDBLite consensus disorder prediction 452 468 - -
Gma03g01515 468 ProSiteProfiles Protein kinase domain profile. 14 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01515 468 Gene3D Transferase(Phosphotransferase) domain 1 2 342 - -
Gma03g01515 468 SMART serkin_6 14 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01515 468 MobiDBLite consensus disorder prediction 331 345 - -
Gma03g01515 468 PANTHER CASEIN KINASE I-LIKE PROTEIN 6 457 - -
Gma03g01515 468 SUPERFAMILY Protein kinase-like (PK-like) 9 295 IPR011009 -
Gma03g01515 468 MobiDBLite consensus disorder prediction 306 468 - -
Gma03g01515 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Gma03g01515 468 MobiDBLite consensus disorder prediction 357 386 - -
Gma03g01515 468 MobiDBLite consensus disorder prediction 387 451 - -
Gma03g01515 468 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Gma03g01515 468 Pfam Protein kinase domain 15 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01515 468 PANTHER CASEIN KINASE-RELATED 6 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01515 Gma-Chr3 41416436 41422152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01515 7 218 Miscellaneous Gene Families AT1G29230 27.397 1.11e-12 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gma03g01515 Pkinase 2.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01515 K08960 - gmx:100781494 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01515 03 41416436 41422152 Gma03g01515 03 41416436 41422152 ECH
Gma19g01571 19 45118564 45124110 Gma03g01515 03 41416436 41422152 GST
Gma03g01515 03 41416436 41422152 Gma10g00360 10 3460882 3470424 PCT
Gma03g01515 03 41416436 41422152 Gma13g01058 13 24745235 24752469 PCT
Gma10g00360 10 3460882 3470424 Gma03g01515 03 41416436 41422152 PCT
Gma13g01058 13 24745235 24752469 Gma03g01515 03 41416436 41422152 PCT