Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01511 ATGGGTCTGAGAGACATTGGTGCTTCACTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTGGTCTGCCATTACCTCTACAAAAAGATCGCAAATGAGGAAGTTCTGAAGGGTACCTTGGTCGAAATTGACCTCCACATATGCGAACCTTGGCAACTTCCTGAGGTGGCTAAGCTCAATGCGAATGAGTGGTACTTCTTCAGTTTCCGGGACCGCAAATATGCTACTGGGTTTCGGACCAACCGGGCAACTACATCAGGGTATTGGAAAGCTACGGGGAAGGATCGTAAGGTGGAGGATCCAGCCACGCAAGAGGTTGTAGGGATGAGGAAAACACTGGTGTTCTACAGGAACAGAGCTCCAAATGGCATCAAAACGGGATGGATCATGCATGAGTTCCGCTTGGAGACCCCACATATGCCTCCAAAGGAGGACTGGGTGTTGTGTAGAGTCTTCCACAAAAGCAAAGAAGATGACAACAGTTCCAAACTCCTACAGTATGAGACGACACCATCATCCCTAACTTTGTTGGCTTCGTCATCTCCCACCAACCAAGCCATGCCTCATGGTGTTGGGTATAATAACCGACTTGCCACCTCTTTCTCTAATTCATTCATGCCAACCCACCAATATCATCATCACTTCAACCCTACCCAAAACGCTAATTCTTTGATGGATCTCCTTCACTTCTCTCGCGAAACCAACACCAACAATACTAGCTTTCTTACTCAAATTGGTGCCAAAGGTGATGACGAATATGGTTTCTTATGGGACATGGATCTAGAAGAAAATAGCCTAGATGATGGCGTGGCTTCAAACTTGGACGCAATAAGATTCGAGGTTGATAATAATAATACTAATAACAACAATATGTCCACATCCTTCGTGTTCGGGCAAGAATGGGAGGGAAGACCCAATTTTGAACCTCAAATTCACAGATCATTAATCACTGACGCGATTCTTTTCGTCTTGACCCAGGTAACAGCAAGGTGGCATCCTAGGGATGCACCATAA 1020 0.4588 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRKVEDPATQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDDNSSKLLQYETTPSSLTLLASSSPTNQAMPHGVGYNNRLATSFSNSFMPTHQYHHHFNPTQNANSLMDLLHFSRETNTNNTSFLTQIGAKGDDEYGFLWDMDLEENSLDDGVASNLDAIRFEVDNNNTNNNNMSTSFVFGQEWEGRPNFEPQIHRSLITDAILFVLTQVTARWHPRDAP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01511 339 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Gma03g01511 339 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Gma03g01511 339 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Gma03g01511 339 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 286 - -
Gma03g01511 339 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Gma03g01511 339 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01511 Gma-Chr3 41343173 41359858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01511 6 159 NAC Transcription Factor Family AT1G56010 57.407 9.78e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gma03g01511 NAM 1.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01511 - - gmx:100782751 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01511 03 41343173 41359858 Gma03g01511 03 41343173 41359858 ECH
Gma19g01567 19 45035334 45050444 Gma03g01511 03 41343173 41359858 GST
Gma03g01511 03 41343173 41359858 Gma10g00353 10 3372470 3383059 PCT
Gma03g01511 03 41343173 41359858 Gma13g01051 13 24648932 24653702 PCT
Gma10g00353 10 3372470 3383059 Gma03g01511 03 41343173 41359858 PCT
Gma13g01051 13 24648932 24653702 Gma03g01511 03 41343173 41359858 PCT