Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01509 ATGCTTACCACAAATGTCACAGGCACAGCTGAATGTTTAAATGTGCTCACGGAGGGAGGGTCAGATCTTCTATTGCTATTGGCTTGGATCCAAAGGACGATTTGGTTATTGGTACAATTCAATATAGCCAGCAAAGATTGCCCCAATGCAAGTCCCCAACTAAGTAAGCTAGCATTGCCACTCAGCTCAATGACAATCTCGTGCTTTGAAATTCATCACCATTTCTTTCACCACTCTTCCACTTTCATAACTATGCATATAGGTCAAATAAATACATCTTCAGTGAAATGTCTTGTCAACAGCATTTCGCGATTCATACATCTAGTTTCTTGCCAAGCAGTGAAACCTATGCCCCTTCAAAAGAACTGTAATAATATGGTTTGTGTGTTGAAGCATTTGAAACCAGTGCTCGATGATATTGTGGATTTCAAAATCCCTTTCGATGAAAATCTGCATAGAGAATGTGAAGAATTGGATATGCGGGTTAATGAAGCTAGGGAGTTCATTGAAAAATGGGGCCCGAAGATGAGCAGGATTCACAGTGTTCTTCAAAGTGGGGAATTGTTGATCAAGTTACAGAACTCTTCATATAAGATTTGTCACATGATAGTTAAATCACTAAAGGGACCTGCATCTGTTTTGGTTTCGGGTAATCTTCAGCAATATATGCAGGAACTTCAGTGTCTTAAGAAGGAACCTGCAATGATCTATATAGAAGACGCATTGAGAAATCAAAGGGATAATATCGAACCTTGCTATGATTCTCTAAAGGAAATTATACGGTTACTCATGATATCAAACCAGGAGCTACTGATAGAAAGTATTGCTGTGGAAAAGGAAAGGTCAAATGCTGAAGTCAATAAAACAAAAGGGGACTTGGATGAAATTAACCAAATTGTGAATCTTGTGTGCAGTTTACGTGATTATGTGATGAAATTTGAGCGCCCTGAAGTCAAAAGTGGTGTTTCAATTCCCCCCTATTTTCGATGTCCTTTATCATTAGAACTCATGTCAGATGCTGTTATTGTGGCTTCAGGTCAGACATATGAAAGGCAATCCATTCAAAAGTGGCTTGATCATGGGCTAACTGTTTGTCCCAACACTCGCCAGATACTTGTCCATACAAATCTCATTCCCAATTATACTGTTAAAGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCCAGTAACTCTAAGCAAAGTAATTCCTCTCATATTTCATCCCCCTCAGATCATTTATTACATCAAGATTTAGATCGTCTGTGTAGCTTTGAGTCTTCAGCTAGTAGCGATTCCAATTCAAATCAAATTGCAAATGCATTTGAGAAACCAAAGGATGATAACTCTTTCAGATCAAGCAGGGAATCTGATAGAAGCTGGAATGGAGAGACAGAAAAGTTTGAGCAACAATCCCCTGCACCTTCATGTAGTAACAGCAGAAGTGAATCATTTTCAAGTTCTATTTCTAGTACTGATTATGTATTTCCAGTTTTGAAAGAGGTGTCAGGCATATCTAATAAGCATCAAAATGTGGAGTTGTCTAGAGAAATTACTGATGGGTGTCCTGCTTCTCCTGCATATAAAGAATCAGTGATTTATCCTTGGTTATCTGGAAAGCAATTTCATAGCCCTGGATCAAAAATTGGAAGGATGGAGGATGAAAATAAGTATAATGAGAGTAACAATATTAGTATTACCAGTCATTCAAAAGTTGCTTCCCATCCTGTAGGATCCAATGAATTGATCACCACATCCCATGTCAATGAGTTGATTGAAGATCTCCAGAGTCAATCGAATGAAACACAAACTGCTGCTGCAGAACAATTGAGGCTCTGTACCAAGCATAACATGGAGAACCGCATCAGTGTAGGGCGGTGTGGGGCAATTATGCCTTTACTCTCACTGCTATATTCAGAAAGGAAGATAATACAAGAGCATGCCGTGACAGCTCTACTGAATTTGTCAATTAATGAAGGCAACAAGGCCTTGATTATGGAAGCAGGGGCCATAGAACCACTTATCCATGTTTTGAAGACAGGGAATGATGGTGCAAAGGAGAATTCTGCTGCTGCTCTGTTCAGCCTCTCTGTAATAGATAACAATAAGGCAAAAATTGGCCGTTCTGGTGCAGTCAAAGCTTTGGTGGGTCTTCTAGCCTCAGGAACTCTTAGGGGAAAGAAGGATTCTGCCACTGCTTTATTCAACCTATCAATATTCCATGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCCGTGAAGTTTCTGGTTCTGCTATTGGACCCTACTGATAAAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTGTCAACAATTGCAGAGGGCCGAATAGAAATTGCAAGGGAAGGGGGCATTCCCTCACTAGTTGAAATTGTTGAATCAGGTTCTCTGAGGGGAAAGGAAAATGCTGCTTCCATCCTCTTGCAACTATGTCTTCATAATCAAAAGTTTTGTACCCTGGTTCTCCAAGAAGGAGCTGTACCTCCCCTAGTTGCATTATCTCAGTCTGGTACTCCAAGAGCTAAGGAAAAGGAAAATAGTGTTCAAATCTTGGTGTTCAATCATGGTTACAGAATCAATTTGTTGAAACAATGTGCTAAAAAATCTGGCATTCTAATCTATGTTCTGCAGTGCATTCTTCCCCCAGCCTTGCCCCCAAAAACAGTGAAGAAGCACAACAGCTTCTCAGTCATTTTCGTAATCAGCGTGAAGGAGTCAAGGGGAAGGGGAAATCATGAAGATAAGGCAATTTTGATCATTTCATTGCCCTTTTCACTCTTTCCTCAGTAA 2823 0.3996 MLTTNVTGTAECLNVLTEGGSDLLLLLAWIQRTIWLLVQFNIASKDCPNASPQLSKLALPLSSMTISCFEIHHHFFHHSSTFITMHIGQINTSSVKCLVNSISRFIHLVSCQAVKPMPLQKNCNNMVCVLKHLKPVLDDIVDFKIPFDENLHRECEELDMRVNEAREFIEKWGPKMSRIHSVLQSGELLIKLQNSSYKICHMIVKSLKGPASVLVSGNLQQYMQELQCLKKEPAMIYIEDALRNQRDNIEPCYDSLKEIIRLLMISNQELLIESIAVEKERSNAEVNKTKGDLDEINQIVNLVCSLRDYVMKFERPEVKSGVSIPPYFRCPLSLELMSDAVIVASGQTYERQSIQKWLDHGLTVCPNTRQILVHTNLIPNYTVKAMIANWCEENNVKLPSNSKQSNSSHISSPSDHLLHQDLDRLCSFESSASSDSNSNQIANAFEKPKDDNSFRSSRESDRSWNGETEKFEQQSPAPSCSNSRSESFSSSISSTDYVFPVLKEVSGISNKHQNVELSREITDGCPASPAYKESVIYPWLSGKQFHSPGSKIGRMEDENKYNESNNISITSHSKVASHPVGSNELITTSHVNELIEDLQSQSNETQTAAAEQLRLCTKHNMENRISVGRCGAIMPLLSLLYSERKIIQEHAVTALLNLSINEGNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVIDNNKAKIGRSGAVKALVGLLASGTLRGKKDSATALFNLSIFHENKARIVQAGAVKFLVLLLDPTDKMVDKAVALLANLSTIAEGRIEIAREGGIPSLVEIVESGSLRGKENAASILLQLCLHNQKFCTLVLQEGAVPPLVALSQSGTPRAKEKENSVQILVFNHGYRINLLKQCAKKSGILIYVLQCILPPALPPKTVKKHNSFSVIFVISVKESRGRGNHEDKAILIISLPFSLFPQ 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01509 940 Pfam U-box domain 324 395 IPR003613 GO:0004842|GO:0016567
Gma03g01509 940 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 398 IPR013083 -
Gma03g01509 940 PANTHER U BOX DOMAIN-CONTAINING 95 873 - -
Gma03g01509 940 Pfam Armadillo/beta-catenin-like repeat 661 700 IPR000225 GO:0005515
Gma03g01509 940 Pfam Armadillo/beta-catenin-like repeat 704 741 IPR000225 GO:0005515
Gma03g01509 940 Pfam Armadillo/beta-catenin-like repeat 622 659 IPR000225 GO:0005515
Gma03g01509 940 Gene3D - 569 892 IPR011989 -
Gma03g01509 940 SMART Ubox_2 327 390 IPR003613 GO:0004842|GO:0016567
Gma03g01509 940 MobiDBLite consensus disorder prediction 448 468 - -
Gma03g01509 940 MobiDBLite consensus disorder prediction 469 490 - -
Gma03g01509 940 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 672 714 IPR000225 GO:0005515
Gma03g01509 940 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 95 873 - -
Gma03g01509 940 SUPERFAMILY ARM repeat 583 854 IPR016024 -
Gma03g01509 940 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 754 795 IPR000225 GO:0005515
Gma03g01509 940 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 631 673 IPR000225 GO:0005515
Gma03g01509 940 ProSiteProfiles U-box domain profile. 323 397 IPR003613 GO:0004842|GO:0016567
Gma03g01509 940 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 713 755 IPR000225 GO:0005515
Gma03g01509 940 SMART arm_5 743 782 IPR000225 GO:0005515
Gma03g01509 940 SMART arm_5 620 660 IPR000225 GO:0005515
Gma03g01509 940 SMART arm_5 783 823 IPR000225 GO:0005515
Gma03g01509 940 SMART arm_5 702 742 IPR000225 GO:0005515
Gma03g01509 940 SMART arm_5 661 701 IPR000225 GO:0005515
Gma03g01509 940 CDD RING-Ubox_PUB 328 370 IPR045210 -
Gma03g01509 940 SUPERFAMILY RING/U-box 322 398 - -
Gma03g01509 940 MobiDBLite consensus disorder prediction 444 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01509 Gma-Chr3 41296355 41303208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01509 95 855 U-box Gene Family AT3G54790 52.010 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01509 - - gmx:100782215 1628.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01509 03 41296355 41303208 Gma03g01509 03 41296355 41303208 ECH