Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01500 ATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCCAGAAGAAGATCAAATTCTCATCAATTATATCAACACTTATGACCATGCTAATTGGCGTGCATTGCCCAAACTAGCTGGGCTGTTAAGGTGTGGAAAGAGTTGCAGACTCCGGTGGATAAATTATCTGAGACCGGACATCAAACGGGGCAACTTTACCAGAGAAGAAGAGGACACCATAATCAGTTTGCATGAAATGTTGGGAAACAGATGGTCGGCTATAGCGGCAAGGTTGCCAGGGAGAACAGACAACGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAGAGGCTGCCACAAAATTATAAACAAAGCCACGACCAGAAAAAACGAAGCAAAAAACAACCAAAGTTAGATGTGGACGCCTCCAAATCAAACCAAGACGCCAAACTAGAACAACAACAAGAGCCCGTGAATAATAATTTTCCCTTTCATGCATCGAACTCAGAGGACATGATGCCACTATCTCCTCCACAATGTTCTAGCCACATGTCCTCCTCCTCCCTCACCACTAGTGACAACAACGGTAGCATTAACAATAACCATGACATGTCCTTAAATGTTAATGATGATATCGACACGCCGGAGAATAATCTTGCATTGGACGAGGATTTCTGGTCGGAAGTGTTGTCGTCTGATAATTCCGGTGAGACAACAAGCGGATTTCCGACCATTGACTATGATCATCAGTTTCTACCGATGTCTCCTCTAATGACCGAAGAAGGGGTCCTTATAGATGCTAGTTCGTCGAGTGTGTGCGACGACGGCATGGACTTTTGGTGCAATGTTTATGCCAGAGCTGAGGAATTTACGCAGTTATTGGAATTGTGA 885 0.4508 MGRAPCCEKMGLKRGPWTPEEDQILINYINTYDHANWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDTIISLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNYKQSHDQKKRSKKQPKLDVDASKSNQDAKLEQQQEPVNNNFPFHASNSEDMMPLSPPQCSSHMSSSSLTTSDNNGSINNNHDMSLNVNDDIDTPENNLALDEDFWSEVLSSDNSGETTSGFPTIDYDHQFLPMSPLMTEEGVLIDASSSSVCDDGMDFWCNVYARAEEFTQLLEL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01500 294 MobiDBLite consensus disorder prediction 110 201 - -
Gma03g01500 294 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Gma03g01500 294 CDD SANT 69 112 IPR001005 -
Gma03g01500 294 MobiDBLite consensus disorder prediction 145 201 - -
Gma03g01500 294 CDD SANT 16 61 IPR001005 -
Gma03g01500 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma03g01500 294 SMART sant 66 114 IPR001005 -
Gma03g01500 294 SMART sant 13 63 IPR001005 -
Gma03g01500 294 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma03g01500 294 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma03g01500 294 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma03g01500 294 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma03g01500 294 Gene3D - 11 67 - -
Gma03g01500 294 MobiDBLite consensus disorder prediction 118 144 - -
Gma03g01500 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma03g01500 294 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 288 - -
Gma03g01500 294 Gene3D - 68 154 - -
Gma03g01500 294 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01500 Gma-Chr3 41249472 41251551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01500 1 294 MYB Transcription Factor Family AT2G31180 48.993 2.13e-85 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma03g01500 Myb_DNA-binding 4.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01500 K09422 - gmx:100775603 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01500 03 41249472 41251551 Gma03g01500 03 41249472 41251551 ECH
Gma19g01555 19 44934829 44937065 Gma03g01500 03 41249472 41251551 GST
Gma03g01500 03 41249472 41251551 Gma10g00065 10 654527 656691 PCT
Gma03g01500 03 41249472 41251551 Gma02g00052 02 619350 621446 PCT
Gma10g00345 10 3274349 3277400 Gma03g01500 03 41249472 41251551 PCT