Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01496 ATGGATTTAGATTTTGATTCCACTTTTTTCCTAAACCAAAACCTTAGTTTCTTCCCAGAAAACTCCTCTATTTTTGGAGACACTTTTTCTTGGGACTACAACTTTGTTTTGGATGATATCTTCAACAACTTGAGCGACAATTCGTCACAATCACAAACCAAGGAAACATCCTCAGCGTCCAATGTTTCCAGTTGTATTGGTAGCGTTGAGTTACAAGAAGTCTCATCTAACACCACTTACAAGGAAGTGAAAAAAGTACGACCACCACCACCATCACCACCACTACCTTCACAACAAGTTGCCAAGGAGCCCAGGATGTACAGAGGAGTGAGGAAGAGGCCGTGGGGGAAATTCGCGGCCGAGATAAGAGATTCCACTCGAAACGGCGTTCGAGTGTGGATCGGAACCTTTGACACGGCCGAAGCCGCGGCTTTGGCTTATGATCAAGCCGCGTTTTCTACAAGAGGGTCTCTTGCGGTGCTGAATTTCCCAGAGGAAGTGGTGAGGGAGTCCCTTAAAGACATGCCAAGTAAGCCATGGGAAGAAGGTTCCTCCCCTGTTTTGGCTCTTAAGAGAAAACACACTATGAGAACAAAGTCCAATTCTAAGAAGAAGACCAAGGTTGATCAGAGGGAACAATTAGACTTCAGCAGAACTTCGCAAAATGTGCTTGTGTTCGAGGATTTGGGTGCTGAGTACCTAGAACAGCTTTTGACTTTGACTTCTTAA 729 0.4499 MDLDFDSTFFLNQNLSFFPENSSIFGDTFSWDYNFVLDDIFNNLSDNSSQSQTKETSSASNVSSCIGSVELQEVSSNTTYKEVKKVRPPPPSPPLPSQQVAKEPRMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKDMPSKPWEEGSSPVLALKRKHTMRTKSNSKKKTKVDQREQLDFSRTSQNVLVFEDLGAEYLEQLLTLTS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01496 242 ProSiteProfiles AP2/ERF domain profile. 106 164 IPR001471 GO:0003700|GO:0006355
Gma03g01496 242 MobiDBLite consensus disorder prediction 194 213 - -
Gma03g01496 242 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Gma03g01496 242 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Gma03g01496 242 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Gma03g01496 242 SMART rav1_2 106 170 IPR001471 GO:0003700|GO:0006355
Gma03g01496 242 PANTHER DNA-BINDING DOMAIN 12 239 IPR044808 GO:0003700|GO:0009873
Gma03g01496 242 SUPERFAMILY DNA-binding domain 106 165 IPR016177 GO:0003677
Gma03g01496 242 Gene3D AP2/ERF domain 106 166 IPR036955 GO:0003700|GO:0006355
Gma03g01496 242 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 239 - -
Gma03g01496 242 MobiDBLite consensus disorder prediction 79 106 - -
Gma03g01496 242 CDD AP2 107 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01496 Gma-Chr3 41202352 41203352 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01496 103 238 AP2-EREBP Transcription Factor Family AT2G31230 58.228 1.07e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma03g01496 AP2 4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01496 K14516 - gmx:100779524 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01496 03 41202352 41203352 Gma03g01496 03 41202352 41203352 ECH
Gma19g01550 19 44885044 44886127 Gma03g01496 03 41202352 41203352 GST
Gma03g01496 03 41202352 41203352 Gma10g00343 10 3245677 3246823 PCT
Gma03g01496 03 41202352 41203352 Gma13g01030 13 24466262 24467298 PCT
Gma10g00343 10 3245677 3246823 Gma03g01496 03 41202352 41203352 PCT
Gma13g01030 13 24466262 24467298 Gma03g01496 03 41202352 41203352 PCT