Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01494 ATGGATTTTAATTCTTCTCTATTTTCATGCCAAAGTCTAGAATCCCATCTCAATTCATGGGAAGAGCTGTTTTCGTTCAACAACCTTCCCTTGAATGCAACAAATGAATCGTCCTTGGACTCCAAATCTTCATCCTCCAATGAAGGAATAATGGAGTCACAAGAAATCACCTCCAATATTACATGTGACGGCCACGTTGAAGAAAAATATTCACCACCACCATCACTACTAGATGGTTCTAAGCGAGAGAAGAGGACCTATAGAGGAGTAAGAAGCAGGCCATGGGGAAAATTCGCAGCAGAAATAAGAGACCCCACAAGAAATGGGGTTCGAGTATGGATTGGAACATTTGTCTCTGCTGAAGAAGCTGCTTTGGCTTATGACCAAGCAGCTTTCTTGACAAGGGGTGTTCTGGCTACCCTTAACTTTTCAGTGCAAGTGGTGATGGAGTCCCTTCAAGACATGGGTTTCAAGGCATTGAAAAATGATCTCTCACCCGTGTTGGCACTCAAGAGGATGCACGTGACGAGAACAAAATCTAGGGCTAGTAGGAGTGGAAACAAAAAGGTTAAAAGGGCTTGCGGCAGCAACGGGAAATGGGACACTAGTACTCAAAATTTGTTGGTGTTGGAGGATTTGGGTCCTGAATACCTAGACCAACTTTTGAGCTTCACTTGCCCTGGTTCTTGGTGCTGA 696 0.4411 MDFNSSLFSCQSLESHLNSWEELFSFNNLPLNATNESSLDSKSSSSNEGIMESQEITSNITCDGHVEEKYSPPPSLLDGSKREKRTYRGVRSRPWGKFAAEIRDPTRNGVRVWIGTFVSAEEAALAYDQAAFLTRGVLATLNFSVQVVMESLQDMGFKALKNDLSPVLALKRMHVTRTKSRASRSGNKKVKRACGSNGKWDTSTQNLLVLEDLGPEYLDQLLSFTCPGSWC 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01494 231 Gene3D AP2/ERF domain 85 147 IPR036955 GO:0003700|GO:0006355
Gma03g01494 231 CDD AP2 87 143 IPR001471 GO:0003700|GO:0006355
Gma03g01494 231 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Gma03g01494 231 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Gma03g01494 231 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 26 225 - -
Gma03g01494 231 PANTHER DNA-BINDING DOMAIN 26 225 IPR044808 GO:0003700|GO:0009873
Gma03g01494 231 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Gma03g01494 231 SUPERFAMILY DNA-binding domain 86 145 IPR016177 GO:0003677
Gma03g01494 231 Pfam AP2 domain 87 132 IPR001471 GO:0003700|GO:0006355
Gma03g01494 231 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01494 Gma-Chr3 41172349 41173335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01494 83 226 AP2-EREBP Transcription Factor Family AT2G31230 51.220 1.69e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma03g01494 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01494 K14516 - gmx:100818907 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01494 03 41172349 41173335 Gma03g01494 03 41172349 41173335 ECH
Gma03g01494 03 41172349 41173335 Gma10g00069 10 699609 700595 PCT
Gma03g01494 03 41172349 41173335 Gma02g00056 02 687552 688349 PCT
Gma13g01026 13 24384439 24385101 Gma03g01494 03 41172349 41173335 PCT