Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01493 ATGAAGGGGAACCAAAGCAAATTAAGTATAGAGGAGTACGTAGGAGGCCATGGTGCTCGTGTGTGGCTTGGAACCTTTAACACAGCTGAGGAGGCTGCAAGAGCTTATGATCGTGCTGCCTTTGAGATGAGAGGTACTATGGCCATTCTCAATTTCCCAAATGAACACCCCCCTTGCAATGTGGCTTCTCTTAGCAAGAAGTCCTCATCATTTAACACTGAGCTTGGTAAACAAGTTGTGGTATTTCAGTGTTTGGATGACAAATTGTTAGAGGAAATCCTTGACTGTGATGGGGAAAACCATCAATGA 309 0.4434 MKGNQSKLSIEEYVGGHGARVWLGTFNTAEEAARAYDRAAFEMRGTMAILNFPNEHPPCNVASLSKKSSSFNTELGKQVVVFQCLDDKLLEEILDCDGENHQ 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01493 102 CDD AP2 11 54 IPR001471 GO:0003700|GO:0006355
Gma03g01493 102 Gene3D AP2/ERF domain 4 54 IPR036955 GO:0003700|GO:0006355
Gma03g01493 102 PANTHER DNA-BINDING DOMAIN 16 93 IPR044808 GO:0003700|GO:0009873
Gma03g01493 102 ProSiteProfiles AP2/ERF domain profile. 1 53 IPR001471 GO:0003700|GO:0006355
Gma03g01493 102 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF098 16 93 - -
Gma03g01493 102 Pfam AP2 domain 16 45 IPR001471 GO:0003700|GO:0006355
Gma03g01493 102 SMART rav1_2 12 59 IPR001471 GO:0003700|GO:0006355
Gma03g01493 102 SUPERFAMILY DNA-binding domain 17 54 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01493 Gma-Chr3 41168542 41168980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01493 17 97 AP2-EREBP Transcription Factor Family AT3G23230 53.684 5.74e-24 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gma03g01493 AP2 1.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01493 - - gsj:114405264 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01547 19 44837261 44837870 Gma03g01493 03 41168542 41168980 GST
Gma10g00340 10 3195193 3195772 Gma03g01493 03 41168542 41168980 PCT
Gma13g01024 13 24361605 24362279 Gma03g01493 03 41168542 41168980 PCT