Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01492 ATGGCACTGAACTACAACCCCTCTTACAATCTTGTGCATCAAGCTCCACATGCTAACACAATAATCTATCACACAACACAACCTGCTTCAGATTTGCCGATACTTGCCATCATTGTGCCCAGCATCTTTGTCACTGCTTTCATACTCATCACCTACTTAACCCTTGTGACAAAATGCTGCTCAAACTGGCACCAACTTAACCCTTTGAGATGGATTTCAACACTACAAGCCTCACAGCATGAACATCAAGACCATCAAGACCCCTTCATAGCACTCTCTCTTTCTCCCATGATGTGGAACCATGGACTTGATGAATCTGCCATCAAAGAAATCCCAACACTTGAATGCACAAAAGCAGAAGCTGAGAAGAATATTCAAAGTGTATGTGGCTGTGTGGTATGTTTGACTGAGTTTCAAGAACATGATATGCTAAAAGTTTTGCCAAACTGTAGCCATGCCTTTCACTTGCATTGCATTGATATTTGGCTTCAAACCAATGCTAATTGCCCTCTTTGCAGATCAAGCATTACTTCAGGCAAAAAACACTGTTCATTGGATGATGTCATAGCTCCAAGTTCTTCCCCTCAGGATTCTCAATTGCTATCTTACATGGGAAGTGACGAAGATTTTGTGGTCATTGAACTTGGGGGACAACATGTGGCAACACTGCCTCAGATGATGCAACGAGAAAGAAGTGACACAAGGGAAAGAAATCAAAGAATAGTAGGGTATAGTAGAAGTCACTCTACAAGGAAGTGTCACCATGTTTCTATCATGGGAGATGAGTGCATTGATGTTAGGAAGAAAGATGAGCAGTTTTCTATTCAGCCGATTCGAAGATCTTTCTCGATGGATTCAGCTAATGATAAGCAACTTTACTTGGATTTTCAAACCATGATACAACAGAATAATAGGCATCAAAATCTGGCTAGTGCCAGTGAAGATTGTAATAGCAGAAGTCGAAGATCATTCTTTCCATTTCGATATGCTCGGGGATCGAAAACTCTGGTCGTTCCTCTAGAGAACAAAGTTTAA 1035 0.4106 MALNYNPSYNLVHQAPHANTIIYHTTQPASDLPILAIIVPSIFVTAFILITYLTLVTKCCSNWHQLNPLRWISTLQASQHEHQDHQDPFIALSLSPMMWNHGLDESAIKEIPTLECTKAEAEKNIQSVCGCVVCLTEFQEHDMLKVLPNCSHAFHLHCIDIWLQTNANCPLCRSSITSGKKHCSLDDVIAPSSSPQDSQLLSYMGSDEDFVVIELGGQHVATLPQMMQRERSDTRERNQRIVGYSRSHSTRKCHHVSIMGDECIDVRKKDEQFSIQPIRRSFSMDSANDKQLYLDFQTMIQQNNRHQNLASASEDCNSRSRRSFFPFRYARGSKTLVVPLENKV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01492 344 SUPERFAMILY RING/U-box 108 179 - -
Gma03g01492 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 179 IPR013083 -
Gma03g01492 344 SMART ring_2 131 172 IPR001841 -
Gma03g01492 344 Pfam Ring finger domain 131 173 IPR001841 -
Gma03g01492 344 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 341 - -
Gma03g01492 344 PANTHER RING-H2 FINGER PROTEIN ATL16 13 341 IPR044600 GO:0016567|GO:0016740
Gma03g01492 344 CDD RING-H2_PA-TM-RING 131 173 - -
Gma03g01492 344 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01492 Gma-Chr3 41163981 41165015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01492 21 310 C3H Transcription Factor Family AT1G04360 40.187 4.66e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01492 K19041 - gmx:100802567 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01492 03 41163981 41165015 Gma03g01492 03 41163981 41165015 ECH
Gma19g01546 19 44830986 44832136 Gma03g01492 03 41163981 41165015 GST
Gma03g01492 03 41163981 41165015 Gma10g00071 10 725692 726612 PCT
Gma03g01492 03 41163981 41165015 Gma20g00880 20 35101014 35102355 PCT
Gma10g00338 10 3181834 3182850 Gma03g01492 03 41163981 41165015 PCT
Gma13g01023 13 24351793 24352806 Gma03g01492 03 41163981 41165015 PCT