Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01481 ATGGACTTAAACTACCCAGAAGAGTGCTACTCCAAGAGCTCAAGCGAAGAAACCAACGATGATATGGGAATTGGAAGATCCTATGAGTGCATCTATTGCAAGAGAGGCTTCACCACAGCCCAAGCCTTAGGTGGACACATGAACATACACAGAAAAGAAAGGGCAAACAAGACCAAACCCAGTTTCCAACCTCCTTCTTCGAGTTCAAACAACGTTGATGACATCAACAACTATGCAGATCTCGGGTTCTATTCACAGATTTCAAGCCTCTCATCCACTGCTCCTATTGATGCTAATAGCTACCGTGAAGTTTTCTTTCCTACTACCACTGCATCAAGTGTTAGGCCTTCTTCCCATGGTGAGGTTTTGTGTGTGGAAAACCAACGGGGTCATCACGTGTTTGAGCAAGATTGGAGGAAGAGAAATTTGAGCTTGTACAGTACTAATCCGTTGTGTTTTCATGAAATTAAAGATAAGTTTGAAGAGAGTGAAGAGAATGGCCTGGATTTGGAGCTGAGGCTTGGTTATCTTCCATAG 537 0.4339 MDLNYPEECYSKSSSEETNDDMGIGRSYECIYCKRGFTTAQALGGHMNIHRKERANKTKPSFQPPSSSSNNVDDINNYADLGFYSQISSLSSTAPIDANSYREVFFPTTTASSVRPSSHGEVLCVENQRGHHVFEQDWRKRNLSLYSTNPLCFHEIKDKFEESEENGLDLELRLGYLP 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01481 178 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Gma03g01481 178 Gene3D Classic Zinc Finger 11 79 - -
Gma03g01481 178 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Gma03g01481 178 MobiDBLite consensus disorder prediction 1 20 - -
Gma03g01481 178 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 13 178 - -
Gma03g01481 178 Pfam C2H2-type zinc finger 28 53 - -
Gma03g01481 178 PANTHER OS07G0101800 PROTEIN 13 178 - -
Gma03g01481 178 SUPERFAMILY beta-beta-alpha zinc fingers 26 55 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01481 Gma-Chr3 41052299 41052835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01481 28 90 C2H2 Transcription Factor Family AT5G43540 50.794 2.26e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g01481 zf-C2H2_6 5.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01481 - - gmx:102665426 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01537 19 44722502 44723026 Gma03g01481 03 41052299 41052835 GST
Gma03g01481 03 41052299 41052835 Gma10g00325 10 3061191 3061674 PCT
Gma03g01481 03 41052299 41052835 Gma13g01009 13 24220657 24221238 PCT
Gma10g00325 10 3061191 3061674 Gma03g01481 03 41052299 41052835 PCT
Gma13g01009 13 24220657 24221238 Gma03g01481 03 41052299 41052835 PCT