Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01480 ATGTTTCTATTGCGGAATATATATGAAGCTGAGATTCAATATGGATCACTCTACTCATCAGTTTTGAAGTCCAAAGAAGTATATGAGCCTCTTAATTGTAAACATTTTGGAAGAACAAGACCAAGAGGTTCCATGGAAGGAAACTTTCTGACAAGAAACAGGTTTGGGTTTGAGGAGCATTCATGGCCTACTAGAAACTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAGTCTGCTCAAGCTTTGGGTGGTCACATGAATGTTCACAGAAGGGATAGGGCAAGATTGAGATCTTGCTTACCCCCGTCATCATGGGTTTCTGAGTGTCCTAATAAACCTAACTCCATTAAGCCTAATCCAACTCATCTTTCACCTTCATCTCCATCATCATTATGTCTATCTAATAACCTTTTGAATTGTGCTCATACTTTTCCACTTTATAGCCCTTCTTTGACTTTGTCTTCTTCACTGACTCCAGCTTCTCCCAATGGAGACAATAAACCAAGAAGAGTATCTCCGGATCCACATCTTCTTCCTCTTTTGATTCCTCAAAGCAGTGAGGAAATTAAGATGAATAAGAATAAAGTAAGTGGTTTAGGAGTTGAAGAAGTACAGGGTTGTGCAATAGGGGAAAAACTCAAGGTTTTCAAGACTAGTACTAGTGAGCATAACATCAAGCTGGAGTTGGGAATAGGGTTGCTTAAACAACCAGAGATGTTAGATTTGGAGCTACGATTGGGGCACAGCTAG 750 0.3987 MFLLRNIYEAEIQYGSLYSSVLKSKEVYEPLNCKHFGRTRPRGSMEGNFLTRNRFGFEEHSWPTRNYACSFCKREFKSAQALGGHMNVHRRDRARLRSCLPPSSWVSECPNKPNSIKPNPTHLSPSSPSSLCLSNNLLNCAHTFPLYSPSLTLSSSLTPASPNGDNKPRRVSPDPHLLPLLIPQSSEEIKMNKNKVSGLGVEEVQGCAIGEKLKVFKTSTSEHNIKLELGIGLLKQPEMLDLELRLGHS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01480 249 Pfam C2H2-type zinc finger 67 91 - -
Gma03g01480 249 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Gma03g01480 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Gma03g01480 249 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 59 248 - -
Gma03g01480 249 PANTHER OS07G0101800 PROTEIN 59 248 - -
Gma03g01480 249 SUPERFAMILY beta-beta-alpha zinc fingers 64 93 IPR036236 -
Gma03g01480 249 Gene3D Classic Zinc Finger 51 102 - -
Gma03g01480 249 SMART c2h2final6 67 89 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01480 Gma-Chr3 41033470 41034586 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01480 61 247 C2H2 Transcription Factor Family AT3G23130 39.683 1.65e-20 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g01480 zf-C2H2_6 8.7e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01480 - - gmx:102666850 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01536 19 44711098 44713069 Gma03g01480 03 41033470 41034586 GST
Gma03g01480 03 41033470 41034586 Gma10g00324 10 3051217 3051876 PCT
Gma03g01480 03 41033470 41034586 Gma13g01008 13 24212035 24212670 PCT
Gma10g00324 10 3051217 3051876 Gma03g01480 03 41033470 41034586 PCT
Gma13g01008 13 24212035 24212670 Gma03g01480 03 41033470 41034586 PCT