Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01468 ATGCAGCAGCAGGGAGTGAGTGCGAGCGAGGAGGGAAGGAGAAGCAGCATGTCGAATCAGGTGGTCAAAGTGCGAAGGAACACAATTGTAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACAACCATATCCGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTACGGATGAGGAGATAGAATGTTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCGCTCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGGAGAAAGGTGAAGGCACCTGAAGTTGTCACCTCAGTACCATTACCGGCTAGGAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACTCCAAGGGTATCTACACAAGCAGCTATGACGGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTGGTCTGCGATCCACTAGTTTTTCCATTGAAAAGCCCATTAAAAAAGAGGAAGATTTGCTGGAAGATCGTCCTGATAGTTCAAGTTCGCCTGACACTTCATATAAGTTTGCTCAGAATTCTGGACAGAGTATCTCTCCTTGTGAGGGTAGTCAATCCATACCAAATAAAGGATCAGAGAATGGTGCCGAACCATGGGATGCAAAATTGGATCTTTGGAAACCTTTGAATTTCTTAGTAGAGGTTGCAAGTAGGAGTAAATCTTTCAAGTCGAATAATGTGCAAGGGTCTGATGCTAAATTAGAAACCAATCAAGTAAATGAGAGTGATTCTCAAGTTCAGAAAACCAAAAATAAGGAAAATAAACGTAAGGCAAAAATTGAAGATGAAAAGAGTAGCCCTTATCCTGTCTCTTCAGATACAGCAAAACCAAATAAATTGCGCAGAATACGCAAGAAAAAGGAGACTGCTTCTGGAGAATCTGGCATATCACCCCAAGCTGTGCTGGATTCTGCCAGCAATAGACTCTCAAGGACTGGTCCAATTTGGTTCTCCTTAGTGGCTTCTGAAAACCAGGAAGGAGATGCTCCCTTGCCTCAAATTCCTGCAAGTTATTTGAGAATAAAggatggtagcatatcagtttcgttcatccaaaaatatctaatgaagaaactggatttgaccagtgaaacagagGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACATTGCAGCTATATAACTTGGTTGAGTTGTGGCTGGATATGGCGTCCACGCCACAGAGAATTCCAGCAACTATTGGGTCCTCAGCAAAGGATTTTGTCATGGTCCTGGCTTATGGTCGGAAGGTTCCACACACTTGA 1338 0.4126 MQQQGVSASEEGRRSSMSNQVVKVRRNTIVACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEEIECCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSVPLPARRKERSLSSLVVSTPRVSTQAAMTGRRTKPTRKASGLRSTSFSIEKPIKKEEDLLEDRPDSSSSPDTSYKFAQNSGQSISPCEGSQSIPNKGSENGAEPWDAKLDLWKPLNFLVEVASRSKSFKSNNVQGSDAKLETNQVNESDSQVQKTKNKENKRKAKIEDEKSSPYPVSSDTAKPNKLRRIRKKKETASGESGISPQAVLDSASNRLSRTGPIWFSLVASENQEGDAPLPQIPASYLRIKDGSISVSFIQKYLMKKLDLTSETEVEIKCMGQPVLPTLQLYNLVELWLDMASTPQRIPATIGSSAKDFVMVLAYGRKVPHT 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01468 445 Pfam Zinc finger, C3HC4 type (RING finger) 35 75 - -
Gma03g01468 445 MobiDBLite consensus disorder prediction 268 288 - -
Gma03g01468 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 127 IPR013083 -
Gma03g01468 445 SMART ring_2 35 75 IPR001841 -
Gma03g01468 445 MobiDBLite consensus disorder prediction 128 147 - -
Gma03g01468 445 MobiDBLite consensus disorder prediction 243 267 - -
Gma03g01468 445 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 18 441 IPR044807 GO:0004842
Gma03g01468 445 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 18 441 - -
Gma03g01468 445 ProSiteProfiles Zinc finger RING-type profile. 35 76 IPR001841 -
Gma03g01468 445 SUPERFAMILY RING/U-box 29 99 - -
Gma03g01468 445 MobiDBLite consensus disorder prediction 243 320 - -
Gma03g01468 445 MobiDBLite consensus disorder prediction 182 214 - -
Gma03g01468 445 MobiDBLite consensus disorder prediction 165 181 - -
Gma03g01468 445 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Gma03g01468 445 MobiDBLite consensus disorder prediction 125 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01468 Gma-Chr3 40911465 40916731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01468 19 364 C3H Transcription Factor Family AT2G30580 55.331 5.06e-119 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01468 K16277 - gmx:100815540 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01528 19 44619527 44624921 Gma03g01468 03 40911465 40916731 GST
Gma03g01468 03 40911465 40916731 Gma10g00310 10 2862018 2868521 PCT
Gma03g01468 03 40911465 40916731 Gma02g01291 02 14998554 15005478 PCT
Gma10g00310 10 2862018 2868521 Gma03g01468 03 40911465 40916731 PCT
Gma02g01291 02 14998554 15005478 Gma03g01468 03 40911465 40916731 PCT