Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01450 ATGTTCCCCACTGCTATTTCCTATTCAACTTCTTTGTCTGAGGATGCCAGTGTTTCTTCTGGTACAAAAGTTCAGGACTTGGGAGGACTCAATCATGGGGTCTCAAGCATTTCTCCTCAGCAACAGCCTCAAAAGATCAAGAAAAAGAGGAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTATGGCCACAAACAGATTTGTTTGTGAGATCTGTCACAAGGGTTTCCCGAGAGATCAGAACCTGCAGCTACATAAGAGGGGCCACAACCTCCCTTGGAAGCTGAAGCAAAGGAGCAGCAAAGAGGTGAAAAAGAAAGCATACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCCTCAAGGGCCCTGGGGGATCTTACAGGAATCAAGAAACACTTCTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATACGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACACTTTTTTCCAGGAAGGACAGTTTCATAACACATAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAATCAATTAGCCGCTGCAGCCGCCGCCACCGTCACCACCACAACAACAAACCCATTCCAATCTCTATATCTTTTCCAAACCCAACAACAGAACTTCCAAAACCACCAAATGACCAGTTTCAACCAATGGGACTCATCTCAAGAAAACCCTAACCCTAGCAACAACATTGCCACCACTTCCCTCCACATCAAGCCAGAGTCTCAAAGCTTCCACAACCCCACCCTCTCTTCATTTCTCCAACAGCAACAACAAGGGCAACAGCCCAACAACAACAACAGGGGCATGATAGCCTCACCATTTGGGAACCTCCACGTGGCAGCAGCAGCACCTGCCACGTCATCATACATGTCAGCCACTGCGCTGCTTCAGAAGGCTGCAACCGTTGGAGCCGCTGCCATAACAGGCCCAGTACCTGTTGGGCCACAACAGCGCGTGAGGGGTCACGTGGCTCACCACCTCGGCGCAGGCGAGTTCGGAATCGGTACAGTGAGTCAACTCGACCCGGTGGTGTTGGTGCCAGATAACAACAACTACACGAGAACAATGTTCAAGAGTAGTGACCGTCTCACAAGGGACTTTCTGGGTCTCACGGCAGATGCTAACGGCGGCGCGGTTGACGTTAGCACCAACGTCAAGGATATGCTAGCGTTCACTGGGGCCGTAGAGTACCACCAAGTCCAACCGCACCGTCAACATCATCACCACCACGCGCTTCTGAAGCCCCAACAAGGCTTTGGTTTCCTTGGGACAACCACTGCCCCCGAGACGTGGTGGAATTGTTAG 1419 0.5025 MFPTAISYSTSLSEDASVSSGTKVQDLGGLNHGVSSISPQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLMATNRFVCEICHKGFPRDQNLQLHKRGHNLPWKLKQRSSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAAAAAATVTTTTTNPFQSLYLFQTQQQNFQNHQMTSFNQWDSSQENPNPSNNIATTSLHIKPESQSFHNPTLSSFLQQQQQGQQPNNNNRGMIASPFGNLHVAAAAPATSSYMSATALLQKAATVGAAAITGPVPVGPQQRVRGHVAHHLGAGEFGIGTVSQLDPVVLVPDNNNYTRTMFKSSDRLTRDFLGLTADANGGAVDVSTNVKDMLAFTGAVEYHQVQPHRQHHHHHALLKPQQGFGFLGTTTAPETWWNC 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01450 472 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Gma03g01450 472 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Gma03g01450 472 Gene3D Classic Zinc Finger 110 200 - -
Gma03g01450 472 MobiDBLite consensus disorder prediction 279 305 - -
Gma03g01450 472 MobiDBLite consensus disorder prediction 17 48 - -
Gma03g01450 472 MobiDBLite consensus disorder prediction 17 59 - -
Gma03g01450 472 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Gma03g01450 472 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 450 - -
Gma03g01450 472 SMART c2h2final6 76 98 IPR013087 -
Gma03g01450 472 SMART c2h2final6 152 172 IPR013087 -
Gma03g01450 472 SMART c2h2final6 117 147 IPR013087 -
Gma03g01450 472 Pfam Zinc finger, C2H2 type 76 98 IPR013087 -
Gma03g01450 472 Gene3D Classic Zinc Finger 72 99 - -
Gma03g01450 472 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01450 Gma-Chr3 40719829 40723516 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01450 15 461 IDZ Gene Family AT4G02670 49.348 4.74e-129 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gma03g01450 zf-C2H2 0.0028 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01450 K25870 - gmx:100812334 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01506 19 44423330 44426960 Gma03g01450 03 40719829 40723516 GST
Gma03g01450 03 40719829 40723516 Gma10g01507 10 42174695 42178237 PCT
Gma03g01450 03 40719829 40723516 Gma20g02198 20 49099534 49103482 PCT
Gma10g00287 10 2621082 2624594 Gma03g01450 03 40719829 40723516 PCT
Gma20g02198 20 49099534 49103482 Gma03g01450 03 40719829 40723516 PCT