LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma03g01449	ATGAACTACTTGTATCCTGTGAAAGAAGAGTACTTGGAATGGCCACCACCGTCGTCGTCGCCGCCAACAACGGGAGGAGTTGATGAGTCAGCAATGGTTCCTCCTCCTCGGCCAATGGGGGGGCTTCACGAAATAGGGCCACCCCCATTTCTGACCAAGACTTACGATGCAGTGGAGGATCCCACCACTAGCCACATGGTTTCATGGAACAGAGGAGGTGCCAGCTTTGTTGTTTGGGATCCACACGCTTTCTCCAGAGACCTTCTTCCTAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTTAGACAACTAAACACTTACGGTTTTAGAAAAATTGATCCAGATAGGTGGGAGTTTGCAAATGAAGGATTCCTTAGAGGGCACAGGCACCTGTTGGCAAACATaaggagaaggaaacaaccttcttctcagccttcttcttcttcttcttcatcctcttattattattattcttcttcttctcAACAAGCACAACAAGGTCACTGTGTTGAAGTTGGTCGCTTTGGACTTGATGAAGAGATTGATCGTTTGAGGCGTGACAAGCACGTGTTGATGATGGAGCTTGTGAAGCTGAGACAGCAGCAACAGAACACAAGGTCATACCTTCAAGCAATGGAGGAGAGGCTAAGAGGGACGGAAATTAAGCAGCAACAAATGATGGCTTTCTTGGCTAGAGCTTTGAAAAATCCAACCTTTATTCAGCAGCTACTTCAGCAGAAGGAGAAGAGGAAGGAGCTTGAAGAGGCCATGTCCAAGAAGAGGAGAAGGCCAATTGAGAGAGGGCCAAACCATGGGGTTGTTGGAGAAGAATCAAGCAGTGTTAAGGTTGAGTCTCTTGTGTTTGGTGATGAATATGGTTTTGGAGTGTCAGAGTTGGAAGTGTTAGCTATGGAGATGCAAGGTTATGGTAAGGGAAGGAGGGAACAAGAGGAGGAGCCTGATGAGGCACTAGATCAATCACAAGAGAGGCTGGAGAAAGAGCTTGATGAAGGGTTCTGGGAAGAACTTTTCAGTGAGGGTTTTGAGGGTGAATTGGATACTAATCCAACTAATTCCCAAGACCAAGATGAAGAAGAAGAAGATCATGTCAATGTGTTGGCCAATCGCTTTGGTAGGTTGCAGCTGTTGCTTGGACAAGAATCTATGGTAGTGATAGCAATCGTTATTTACTCAAGATTATACAGAAGCCGTAGAATGGATACGAATTCGAAGTAG	1239	0.4302	MNYLYPVKEEYLEWPPPSSSPPTTGGVDESAMVPPPRPMGGLHEIGPPPFLTKTYDAVEDPTTSHMVSWNRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLANIRRRKQPSSQPSSSSSSSSYYYYSSSSQQAQQGHCVEVGRFGLDEEIDRLRRDKHVLMMELVKLRQQQQNTRSYLQAMEERLRGTEIKQQQMMAFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIERGPNHGVVGEESSSVKVESLVFGDEYGFGVSELEVLAMEMQGYGKGRREQEEEPDEALDQSQERLEKELDEGFWEELFSEGFEGELDTNPTNSQDQDEEEEDHVNVLANRFGRLQLLLGQESMVVIAIVIYSRLYRSRRMDTNSK	412

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma03g01449	412	Gene3D	-	43	140	IPR036388	-
	Gma03g01449	412	MobiDBLite	consensus disorder prediction	258	277	-	-
	Gma03g01449	412	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	30	370	IPR027725	-
	Gma03g01449	412	MobiDBLite	consensus disorder prediction	14	34	-	-
	Gma03g01449	412	MobiDBLite	consensus disorder prediction	138	156	-	-
	Gma03g01449	412	Coils	Coil	244	264	-	-
	Gma03g01449	412	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR A-6B	30	370	-	-
	Gma03g01449	412	Pfam	HSF-type DNA-binding	50	139	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gma03g01449	412	Coils	Coil	182	216	-	-
	Gma03g01449	412	SUPERFAMILY	"Winged helix" DNA-binding domain	46	139	IPR036390	-
	Gma03g01449	412	SMART	hsfneu3	46	139	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gma03g01449	412	MobiDBLite	consensus disorder prediction	136	156	-	-
	Gma03g01449	412	PRINTS	Heat shock factor (HSF) domain signature	88	100	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gma03g01449	412	PRINTS	Heat shock factor (HSF) domain signature	50	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gma03g01449	412	PRINTS	Heat shock factor (HSF) domain signature	101	113	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gma03g01449	412	MobiDBLite	consensus disorder prediction	311	331	-	-
	Gma03g01449	412	ProSitePatterns	HSF-type DNA-binding domain signature.	89	113	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Gma03g01449	412	MobiDBLite	consensus disorder prediction	348	369	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma03g01449	Gma-Chr3	40707401	40709749	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gma03g01449	25	381	HSF	AT3G22830	51.169	1.46e-121	357

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Gma03g01449		HSF_DNA-bind	6.1e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma03g01449	K09419		-	gmx:100811798	683.33

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma19g01505	19	44407655	44409939	Gma03g01449	03	40707401	40709749	GST
	Gma03g01449	03	40707401	40709749	Gma10g00286	10	2609355	2611010	PCT
	Gma10g00286	10	2609355	2611010	Gma03g01449	03	40707401	40709749	PCT