Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01444 atggagcagtatgaaattctagaacagatcggcaaaggtgcatttggttctgcccttcttgtgaggcacaagcacgaaaagaaaaagtatgttcttaaaaagatccgccttgctcgtcaaactgacagaacccgtagatctgcccaccaggagATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCCGAAGCTATAAAAAAGGCTAATGGTATTAACTTTCCTGAAGAGAAACTTTGTAAGTGGCTTGTTCAATTGCTGATGGCACTTGATTATTTGCATGGAAATCATATTCTTCATCGTGATGTCAAGTGCTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGTCATCTGATGATCTTGCTTCCTCGGTTGTTGGCACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGTTGTATCTATGAAATGGCTGCTTACAAGCCAGCTTTTAAAGCTTTTGACATACAATCATTGCTTATAAAAATAAACAAGTGTATAGTATCTCCCATGCCAACTATGTATTCTGCTGCTTTTCGAGGGCTTGTCAAAAGTATGTTGCGGAAAAATCCTGAGTTGAGGCCAACTGCTGCAGAATTACTTAATCATCCACATCTTCAGCCTTACATTCATAAAATTCAACTAAAATTAAATAGCCCCAGAAGAAGTACTTTTCCATTCCAATGGCCCGAGTCAAATTACGTAAGGAGAACTCGGTTCGTAGATCCAGAGTCTGTTTACACTCTTTCTGACCTAGATAAATGTTTGTCATTTAGCAATGACATGGCCTTGAATCCTAGTGTTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCACTTGTTCAAAAGAGAAGATCTATGAACTATCTGTAGGTTGTGTCCGTGAAAAATACAAAACTGACAAATCAAAAGCCAGTAAGTTCTCAACTGTTGAGAGAACACCAAGATCAAGAGCAGTTACGGTTTCTGCCACTACCAAAAGGCATACAATAGCAACATCAAAGACAACCCATTCTGGTCCAAAACGTGATTCACTTCCAGCATCTCATGCACCATCTAGAAAATTTTCCACACCACCAAGAACCAGGGCAAGGGCAACACCAAACTTGTACACTAATGTTCTTGGAAGTCTAGACTCTCTTGATGTTTCCATTAATGCACCGCGAATTGACAAGATAGTTGAATTCCCAATGGCTTTCTGCGAGGATCCTTTTTCACCTATCCGTGGACCATCATCAACATCAGCGCGCTGCTCTTCTAGTTCAGCAGGGAGTACTGCTGATTGCTCCATCACAAAGGACAAGTGTACAATCCAAGAGGACAAAGTTACTCTCCCCACAAGTATCACTGATGCTTGCCCTGCTCCAAAGGAAACTAAATGCTCTTATGAGCATGTCAAAGATTGTGTTTCAAGTCATTCCTCTACTGACTTGGATCAACGCCGGTTTGACACATCATCGTACCAGCAACGTGCGGAGGCATTGGAGGGGTTGCTGGAGTTCAGTGCTAGGCTCCTACAACAACAGAGGTTTGATGAGCTTGGGGTGTTGCTAAAGCCATTCGGGCTTGAGAAGGTTTCTCCAAGAGAAACAGCTATTTGGTTGACCAAGAGCTTTAAACAAACTGCAGTCTAA 1812 0.3758 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGINFPEEKLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLSSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAYKPAFKAFDIQSLLIKINKCIVSPMPTMYSAAFRGLVKSMLRKNPELRPTAAELLNHPHLQPYIHKIQLKLNSPRRSTFPFQWPESNYVRRTRFVDPESVYTLSDLDKCLSFSNDMALNPSVSGTEQVSQCSTQRAHGLSTCSKEKIYELSVGCVREKYKTDKSKASKFSTVERTPRSRAVTVSATTKRHTIATSKTTHSGPKRDSLPASHAPSRKFSTPPRTRARATPNLYTNVLGSLDSLDVSINAPRIDKIVEFPMAFCEDPFSPIRGPSSTSARCSSSSAGSTADCSITKDKCTIQEDKVTLPTSITDACPAPKETKCSYEHVKDCVSSHSSTDLDQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGLEKVSPRETAIWLTKSFKQTAV 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01444 603 MobiDBLite consensus disorder prediction 410 424 - -
Gma03g01444 603 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Gma03g01444 603 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01444 603 CDD STKc_Nek 3 258 - -
Gma03g01444 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Gma03g01444 603 PANTHER SERINE/THREONINE-KINASE NEK4 1 592 - -
Gma03g01444 603 MobiDBLite consensus disorder prediction 373 424 - -
Gma03g01444 603 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01444 603 MobiDBLite consensus disorder prediction 373 402 - -
Gma03g01444 603 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01444 603 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 592 - -
Gma03g01444 603 SUPERFAMILY Protein kinase-like (PK-like) 1 326 IPR011009 -
Gma03g01444 603 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Gma03g01444 603 Gene3D Transferase(Phosphotransferase) domain 1 86 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01444 Gma-Chr3 40658246 40664514 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01444 10 259 MAP Kinase Kinase Kinase AT1G53570 30.980 3.08e-37 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gma03g01444 Pkinase 1.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01444 K08857 - gmx:100805201 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01444 03 40658246 40664514 Gma03g01444 03 40658246 40664514 ECH
Gma19g01501 19 44365541 44373183 Gma03g01444 03 40658246 40664514 GST
Gma03g01444 03 40658246 40664514 Gma10g00280 10 2571752 2577807 PCT
Gma03g01444 03 40658246 40664514 Gma02g01321 02 15321396 15327427 PCT
Gma10g00280 10 2571752 2577807 Gma03g01444 03 40658246 40664514 PCT
Gma02g01321 02 15321396 15327427 Gma03g01444 03 40658246 40664514 PCT