Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01429 ATGGGTGAGAATTCGCAGTCTCAGACAACGCTCGAGAAACATGACGATGGTGATGAAAGAGGGGTTAAGGAGAGTGGGAACGGAGAATGCTCAAGGAGTCTTGAGGTGTATTTTGGCGATTACGCAATGATAAACATGGGAGAATTTTCAGGGTTTCCTCTGTCATTTGATGTTGGAAATTCAAACCCTCCTAATGATGGCGACAAAGACAAGATTCTGGGGCAGGAAGTTATTACAAGACTTCAAAATAATGGTCACAAAGATAAGACATTTCTAAGGTTGGAACTTATTGAAAGACTTCAGCACCGCACCAGAGGTTTAAGACGTTTAACTAGGATACATGGTGTGGACTTGACGAACGAAACTGAGGATACATGCCCCAGGAGATCCATAAAGAAAGAAATATTAGAAGAGGTGCTGGGAATTTCTCATCCCATGGTGAGTCAATCTGAGAAGGTTGTGGCACATGATGAGGAAAATGATGTAAATGTGCTTGAAAAAGAGCCACGTTCTGGTGCAAGAAAGACTAGGTCTGCTAGTAGGAAGCTGAACACAGGAAAAAAAACTGTGCTTTCATGGATGATTGAAACTGGAACAATACGGCAACGTGAGAAGGTTCATTATATGGATCACAAAAATGAACGTGCACTACTGAGTGGTGAAATCTTTGGAGACGGAATTCTGTGTGATTGTTGTTTTCAAGTTGTGTCCATTTCACAGTTTGAAGCCCATTCAAGGAGGCAAATAATCTCTGATGATACAGTACTGGAGAATATGTCTGAGGAATCTGATCCACTGAAGAATATGTTCGAAGAGAGGAGAGGACGTTCTCTCTTGCAATGCATGGAAGAAGCATGGAATAGACAAGATAAATCTTCTGTTGGTAAATTCTATAACGAAGTTCGTGTTAGGGGGAGTGACTATAACGATGTTACTTGTAGTCTCTGTGGGAAACGTGGAGACCTTATTTGTTGCGACACTTGCCCATCAACTTTCCATCAAAGCTGCTTGGATATACAAACACTTCCATCAGGTGACTGGAACTGTATCTATTGCTGTTGCAAATTTTGTGGGTTGTATAAGCAAATGGACAGCTTTCAGTTATCCTCATGCCGTCTATGCGAGCAAAGATATCACCAATCCTGTCTTGAGGCCACTGGAGCCAATACTTCTCATTCTAAACACTCATCCTTATGTGGAAACGGGTGTAAAGAGTTATATGAGAGACTTGAAAAGCTTCTTCGGGTTAAACATAATATAGAAGATGGATTTTCTTGGTCTTTTATTTGCCGGTCAGATGTTGATTCTAACGCCACGCAGATAGAACCCCGTGTGGTTGAATGTAATGCCAAAATCGCTGTTGCGTTATCTGTAATGTATGAGGGCTTCAGGCCATGCATTGATGATGGAAGTGAGATTAATCTGATCCACAGTGTTATGTATAATTGTGGATCAAACTTCCCTCGCCTGGATTGTAAGAGATTTATTACTGCAATTCTAGAGAGAGGTGATGAGATTACCAGCGTTGCATCAATCAGGATTCATGGGAACCAACTAGCAGAGATGCCATTTGTTACAACCCGCTCTGTTTATAGGCATGAAGGAATGTTCAGCCGGCTTCTAAACGCCATTGAATCGGCACTCAGCTTTCTAAATGTTGAGTTATTAGTCATACCATCTGTCAAAGAATTAAGAGAAATTTGGATTCGTTCCTTTGGGTTTGAGCCACTTGATTTGAGAAGCAAGAAAATGATGAAGGGCATGAATCTGTTGGTATTCCGTGGCACCGAAATGTTACAGAAAAAGATACCAAAGCGTAATTTTCCTGATGAGAATTTGAAGTCATATAGCCGTCAAACAAGTAAAAGAAATTTGGACTCGTTCCTTTTTAATTAA 1896 0.4088 MGENSQSQTTLEKHDDGDERGVKESGNGECSRSLEVYFGDYAMINMGEFSGFPLSFDVGNSNPPNDGDKDKILGQEVITRLQNNGHKDKTFLRLELIERLQHRTRGLRRLTRIHGVDLTNETEDTCPRRSIKKEILEEVLGISHPMVSQSEKVVAHDEENDVNVLEKEPRSGARKTRSASRKLNTGKKTVLSWMIETGTIRQREKVHYMDHKNERALLSGEIFGDGILCDCCFQVVSISQFEAHSRRQIISDDTVLENMSEESDPLKNMFEERRGRSLLQCMEEAWNRQDKSSVGKFYNEVRVRGSDYNDVTCSLCGKRGDLICCDTCPSTFHQSCLDIQTLPSGDWNCIYCCCKFCGLYKQMDSFQLSSCRLCEQRYHQSCLEATGANTSHSKHSSLCGNGCKELYERLEKLLRVKHNIEDGFSWSFICRSDVDSNATQIEPRVVECNAKIAVALSVMYEGFRPCIDDGSEINLIHSVMYNCGSNFPRLDCKRFITAILERGDEITSVASIRIHGNQLAEMPFVTTRSVYRHEGMFSRLLNAIESALSFLNVELLVIPSVKELREIWIRSFGFEPLDLRSKKMMKGMNLLVFRGTEMLQKKIPKRNFPDENLKSYSRQTSKRNLDSFLFN 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01429 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 406 IPR013083 -
Gma03g01429 631 SMART PHD_3 356 404 IPR001965 -
Gma03g01429 631 SMART PHD_3 312 353 IPR001965 -
Gma03g01429 631 ProSitePatterns Zinc finger PHD-type signature. 313 352 IPR019786 -
Gma03g01429 631 MobiDBLite consensus disorder prediction 157 175 - -
Gma03g01429 631 Pfam Tify domain binding domain 220 285 IPR032308 -
Gma03g01429 631 ProSiteProfiles Zinc finger PHD-type profile. 310 355 IPR019787 -
Gma03g01429 631 MobiDBLite consensus disorder prediction 1 28 - -
Gma03g01429 631 MobiDBLite consensus disorder prediction 9 26 - -
Gma03g01429 631 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 185 627 - -
Gma03g01429 631 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 9 184 - -
Gma03g01429 631 MobiDBLite consensus disorder prediction 157 183 - -
Gma03g01429 631 PANTHER PHD FINGER PROTEIN 12 185 627 IPR042163 GO:0003714|GO:0045892
Gma03g01429 631 PANTHER PHD FINGER PROTEIN 12 9 184 IPR042163 GO:0003714|GO:0045892
Gma03g01429 631 SUPERFAMILY FYVE/PHD zinc finger 286 353 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01429 Gma-Chr3 40505299 40510244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01429 185 603 PHD Transcription Factor Family AT1G05380 47.183 6.62e-123 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01429 - - gsj:114405256 993.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01429 03 40505299 40510244 Gma03g01429 03 40505299 40510244 ECH
Gma03g01429 03 40505299 40510244 Gma02g01334 02 15488881 15497157 PCT
Gma02g01334 02 15488881 15497157 Gma03g01429 03 40505299 40510244 PCT