Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01406 ATGGCTACACCACCGCCAAATAACAGCCTTCAGACCATGTTGCGGGCTGCAGTGCAATCTGTTCAGTGGACTTACAGCCTCTTCTGGCAACTTTGTCCTCATAAAGGGATTCTAACATGGGGTGATGGATACTACAATGGAGCAATTAAGACACGAAAGACAGTTCAAGCAATGGAAGTTAGCACCGAAGAAGCGTCTCTGCAAAGAAGCGAGCAACTTAGGGAGTTATATGAATCGTTGTCTGGTGGGGAGACAAACGCAAAAACACGAAGACCATGTGCTTCTTTGTCGCCGGAGGATCTAACGGAAACCGAATGGTTCTATTTGTTGTGTGTCTCTTTCTCCTTTCATCCTGGTCTCGGGTTGCCCGGAACAGCATATGCTAGAAGGCAGCATTTATGGCTCAGTGGAGCGAACGAAGTAGACAGCAAAACATTTTCAAGAGCTATTCTTGCCAAGACAGTGGTGTGCATTCCAGTGTTGGAGGGCGTCGTTGAGTTGGGCACAACCGATAAGATGGAGGAAGACCTAAATTTCATCCAACACATAAAGAGCTTCTTCATAGATCAGCAGCATCCTGCTCTCACGGCAAAGCCTGCACTATCAGAACAGTACTCCACTTCCAAGCCCACTTCTTCTTCTTCTTCATACCCTCTTGTCACTGCCAATAATACTATTCCAATCCAAAACATTGTTGATAGAGGAGAAGCTATAATATTGAATAATAATACCAAAGAAGCAGAATTAGCAGTCCCTAACAGTAGTTTCATACCGAGCGAGCTAATGGAACTGGATGCCACCTTGGAGGAATTCAGGGTTGGATCATCTGGAGATGGCTCCAACCACTTGGATTCATTCCCCACTGAGAAATCTATGGCACTGTGTTCAGCAGGGTTGGAGCTCCTTCAACTTCAACTTCCACCAGCTCCAGCACATCCTCCCACAGAAAACCTAGCACAAGGCGGCACAGACACACACTACTCTCAAACAGTGTCCAGCATCCTTCAAAAGAACTCCAGGAGGTGGCCGGAATCACCCTCTCTCAACCTCCTCACTGACTCCTTCCAATCAGCTTTCAACAAATGGAACTCCGGCGCTGACGACTACCAGCACCATTTCCACGTGTCGGTGGCCAGCGTCACCTCCCAGTGGCTCCTCAAGTACATTTTGTTCAGCGTCCCTTACTTGCACACCAACTGGCTCAAGGGCAAGGGCACTTCACCATACGAGACCAGTCACGTGATGGCGGAGCGTCACCGAAGGGAGAAGTTGAATGAGAGGTTTCTCATTCTGCGTTCGATGGTGCCTTCCGTGACAAGAATGGACAAGGCGTCTATCCTGGGAGACACCATCGAATACATCAAACAGTTGAGAGATAAGATTGAGAGCCTTGAGGCGCGTAAGCGCCTCACGGGAAAGAGAAGGATGAGGCAGGTGGAGGTTTCAATCATAGAGAGCGAGGCGCTGTTGGAGGTGGAGTGCGTGCATAGGGAAGGGTTGTTGTTGGATCTGATGACAAAGTTGAGGGAGTTAGGGGTGGAAGTGATGATGGTGCAGTCTTGGGTTAAGGATGATGGAGTGTTTGTGGCGGAGATGAGAGCCATGGTGAGGGAAAATGGTAACGGGATAAAGGCTAGTGTTATTGAAGTGAAAAATGCCCTTAATCAGATCATACCCCGTCATGAACCATACACACTTGCTTCCAGTGATCATTTTTAG 1719 0.4828 MATPPPNNSLQTMLRAAVQSVQWTYSLFWQLCPHKGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSGGETNAKTRRPCASLSPEDLTETEWFYLLCVSFSFHPGLGLPGTAYARRQHLWLSGANEVDSKTFSRAILAKTVVCIPVLEGVVELGTTDKMEEDLNFIQHIKSFFIDQQHPALTAKPALSEQYSTSKPTSSSSSYPLVTANNTIPIQNIVDRGEAIILNNNTKEAELAVPNSSFIPSELMELDATLEEFRVGSSGDGSNHLDSFPTEKSMALCSAGLELLQLQLPPAPAHPPTENLAQGGTDTHYSQTVSSILQKNSRRWPESPSLNLLTDSFQSAFNKWNSGADDYQHHFHVSVASVTSQWLLKYILFSVPYLHTNWLKGKGTSPYETSHVMAERHRREKLNERFLILRSMVPSVTRMDKASILGDTIEYIKQLRDKIESLEARKRLTGKRRMRQVEVSIIESEALLEVECVHREGLLLDLMTKLRELGVEVMMVQSWVKDDGVFVAEMRAMVRENGNGIKASVIEVKNALNQIIPRHEPYTLASSDHF 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01406 572 Pfam Helix-loop-helix DNA-binding domain 411 458 IPR011598 GO:0046983
Gma03g01406 572 Gene3D - 406 473 IPR036638 GO:0046983
Gma03g01406 572 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 410 472 IPR036638 GO:0046983
Gma03g01406 572 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 187 IPR025610 -
Gma03g01406 572 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 408 457 IPR011598 GO:0046983
Gma03g01406 572 PANTHER TRANSCRIPTION FACTOR TT8 9 559 - -
Gma03g01406 572 PANTHER TRANSCRIPTION FACTOR TT8 9 559 - -
Gma03g01406 572 SMART finulus 414 463 IPR011598 GO:0046983
Gma03g01406 572 Coils Coil 447 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01406 Gma-Chr3 40213203 40220723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01406 312 558 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 44.444 1.05e-51 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma03g01406 bHLH-MYC_N 1.7e-47 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01406 - - gmx:100802733 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01406 03 40213203 40220723 Gma03g01406 03 40213203 40220723 ECH
Gma19g01469 19 43935069 43942948 Gma03g01406 03 40213203 40220723 GST
Gma03g01406 03 40213203 40220723 Gma10g00249 10 2289288 2298227 PCT
Gma10g00249 10 2289288 2298227 Gma03g01406 03 40213203 40220723 PCT