Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01399 ATGACTATGACCATGTCAAGAGTGATGTGTAGGCCAACACAACCACTGAAAAACGTTCCTTCTAATTCTTCCATTAGTGGCCAAAACCAGATAATAAGGCCAAAAGAGAAGGTAGTGTTGGTGATGGGAGCAACCGGAAGCGGCAAAACAAGGTTGTCGATCGACCTAGCCACATGTTTTCCATCAGAAATAATAAACTCCGACAAAATACAAGTCTACTCAGGCTTGGACGTTGTCACAAACAAAGCAACAAAAGAAGAACAACGTGGGGTCCCACACCACTTGCTGGGGACACAGAACCCAAACACAGAGTTCACAGCCTCCGACTTCTGCCACATGGCATCACACGCCATTGAATCCATCACTCACCGCGAGAAGGTTCCAATAATCGTGGGAGGCTCCAACTCATACATTGAAGCCTTGGTCGACAAGTTCGGGCCACGTTACGATTGGTGTTGTCTCTGGGTTGATGTTTCCACGTCCGTGCTTCACTCCTACGTTGCGCAGCGCGTGGATCACATGCTTGGTGGCGGAATGGTGAACGAGTTGAGACCCTTTTTCAGTCCCAACGGGGATTACTCGAAGGGGATAAGAAAGGCAATTGGGGTGCCGGAATTTGATGCCTATTTTCGAAGGGAAGCGTTTTCGAGCAACGAGACGAGGGTGAGTTTGTTGCAGGATGCGGTGAGGGATGTGAAGAGGAACACGTGCCACCTAGCATGCAAGCAGATTGGGAGGATTCACAGGTTGAGGAGTGTTAAGGGGTGGAAGATTCACCGTGTTTGTGCCACTCCCGTGTTTCAGAAACGTGGCCAGGAAGCGAATGATGCGTGGAAGAACATTGTGGCGCAGCCTTGTGCCTCCATAGTTTCCCATTTTCTCTATAGTACTGCAAATCATGATTATCAACCTCTGGAGTTAATTCGTTAA 930 0.4871 MTMTMSRVMCRPTQPLKNVPSNSSISGQNQIIRPKEKVVLVMGATGSGKTRLSIDLATCFPSEIINSDKIQVYSGLDVVTNKATKEEQRGVPHHLLGTQNPNTEFTASDFCHMASHAIESITHREKVPIIVGGSNSYIEALVDKFGPRYDWCCLWVDVSTSVLHSYVAQRVDHMLGGGMVNELRPFFSPNGDYSKGIRKAIGVPEFDAYFRREAFSSNETRVSLLQDAVRDVKRNTCHLACKQIGRIHRLRSVKGWKIHRVCATPVFQKRGQEANDAWKNIVAQPCASIVSHFLYSTANHDYQPLELIR 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01399 309 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 26 300 - -
Gma03g01399 309 Gene3D - 35 294 IPR027417 -
Gma03g01399 309 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 169 IPR027417 -
Gma03g01399 309 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 26 300 IPR039657 -
Gma03g01399 309 MobiDBLite consensus disorder prediction 1 28 - -
Gma03g01399 309 Pfam IPP transferase 148 244 - -
Gma03g01399 309 Pfam IPP transferase 71 145 - -
Gma03g01399 309 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 160 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01399 Gma-Chr3 40119512 40120441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01399 148 304 C2H2 Transcription Factor Family AT2G27760 29.891 2.54e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01399 K10760 - gmx:100799520 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01399 03 40119512 40120441 Gma03g01399 03 40119512 40120441 ECH
Gma19g01462 19 43846581 43847831 Gma03g01399 03 40119512 40120441 GST
Gma03g01399 03 40119512 40120441 Gma10g00242 10 2226056 2227261 PCT
Gma03g01399 03 40119512 40120441 Gma02g01355 02 15697302 15698664 PCT
Gma10g00242 10 2226056 2227261 Gma03g01399 03 40119512 40120441 PCT
Gma02g01355 02 15697302 15698664 Gma03g01399 03 40119512 40120441 PCT