Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01372 ATGCCACTCTTCGTGTTCCTTGTCACCATCTTCCTCACTTCCCCAACCCTCTCCCTCTCTGTCCCATCATCATGTCCCCTCAACACCACCCTCCTCCCTTCACAACCCTCCTCCGCCACGCGCTGCCATTACATCCTCCGAGCCATTCGTATTCTCCAATCCGATTACCTCCGCCGCACCGGTTTATTCTTCCCTCCTTCGAATTATTCCTTCTCGTTCACTTTTGATGAGATTAAAAAGGCTACTAGCAGTTTTGCTGGTGACAACATAATTGGGAAAGGGGGTTATGGGAATGTTTATAAAGGGGTACTTTTTGATGGGACTCAAGTTGCATTGAAAAGGTTTAAGAATTGTTCTGTTGCTGGGGATGCTAGCTTCACTCATGAAGTGGAGGTAATTGCAAGTGTTAGGCATGTCAACCTTGTTGCCCTCAGAGGGACTGCTAAGGGCTTGGCTTATTTGCACTATGGAGCTCAACCTTCCATAATCCATAGGGATATTAAAGCTAGTAACATTCTTCTGGATCACAATTTTGAAGCCAAGGTTGCGGATTTCGGGCTAGCGAAGTTTAATCCCGAGGGAATGACTCATATGAGCACTGGAGTGGCTGGAACTAAGGGCTATGTTGCTCCTGAGTATGCTTTGTATGGACAGTTGACAGATAGAAGTGACGTGTTCAGTTTTGGTGTTGTGCTTCTCGAGCTCTTCAGTGGGAAAAAGGCTCTTCATGTGGAAAATGATGGTCAACCCTCTGCACTCACTGACCTTGCTTGGTCATTGGTTAGGTATGGTGAAACTTTGGATGTTATTGAAGATGGTATGCCAGAACTTGGTCCAACAGAAGTTCTTGAGAAGTATGTGTTGGTTGTTGTACAATGTTGTCATCCACAGTTATATGCTAGGCCAACAATGGATCAGGGTGTTAAAATGCTTGAGACAGAAGAAGTGGAACAGCCAATCTCTTGTATTGCTGGGAGGACTGATATTGATGAGAAATCCGTCGCTAGTAACTAG 1014 0.4546 MPLFVFLVTIFLTSPTLSLSVPSSCPLNTTLLPSQPSSATRCHYILRAIRILQSDYLRRTGLFFPPSNYSFSFTFDEIKKATSSFAGDNIIGKGGYGNVYKGVLFDGTQVALKRFKNCSVAGDASFTHEVEVIASVRHVNLVALRGTAKGLAYLHYGAQPSIIHRDIKASNILLDHNFEAKVADFGLAKFNPEGMTHMSTGVAGTKGYVAPEYALYGQLTDRSDVFSFGVVLLELFSGKKALHVENDGQPSALTDLAWSLVRYGETLDVIEDGMPELGPTEVLEKYVLVVVQCCHPQLYARPTMDQGVKMLETEEVEQPISCIAGRTDIDEKSVASN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01372 337 ProSitePatterns Protein kinases ATP-binding region signature. 91 113 IPR017441 GO:0005524
Gma03g01372 337 Gene3D Transferase(Phosphotransferase) domain 1 147 328 - -
Gma03g01372 337 Pfam Protein kinase domain 145 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01372 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Gma03g01372 337 Gene3D Phosphorylase Kinase; domain 1 57 146 - -
Gma03g01372 337 SUPERFAMILY Protein kinase-like (PK-like) 63 312 IPR011009 -
Gma03g01372 337 ProSiteProfiles Protein kinase domain profile. 85 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01372 337 SMART serkin_6 85 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma03g01372 337 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 146 334 - -
Gma03g01372 337 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 72 146 - -
Gma03g01372 337 PANTHER OS01G0253100 PROTEIN 72 146 IPR045271 GO:0004714|GO:0006468
Gma03g01372 337 PANTHER OS01G0253100 PROTEIN 146 334 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01372 Gma-Chr3 39890880 39892137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01372 7 66 Receptor kinase-like Gene Family AT2G48010 35.938 8.23e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Gma03g01372 Pkinase 3.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01372 - - gmx:100819980 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01372 03 39890880 39892137 Gma03g01372 03 39890880 39892137 ECH
Gma03g01372 03 39890880 39892137 Gma19g01438 19 43645259 43646989 ECH
Gma19g01438 19 43645259 43646989 Gma03g01372 03 39890880 39892137 GST
Gma03g01372 03 39890880 39892137 Gma10g00225 10 2071525 2074300 PCT
Gma03g01372 03 39890880 39892137 Gma02g01372 02 15890879 15892881 PCT
Gma10g00225 10 2071525 2074300 Gma03g01372 03 39890880 39892137 PCT
Gma02g01372 02 15890879 15892881 Gma03g01372 03 39890880 39892137 PCT